Biotin
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Basic Info
Common Name | Biotin(F04729) |
2D Structure | |
Description | Biotin is an enzyme co-factor present in minute amounts in every living cell. Biotin is also known as vitamin H or B7 or coenzyme R. It occurs mainly bound to proteins or polypeptides and is abundant in liver, kidney, pancreas, yeast, and milk. Biotin has been recognized as an essential nutrient. Our biotin requirement is fulfilled in part through diet, through endogenous reutilization of biotin and perhaps through capture of biotin generated in the intestinal flora. The utilization of biotin for covalent attachment to carboxylases and its reutilization through the release of carboxylase biotin after proteolytic degradation constitutes the 'biotin cycle'. Biotin deficiency is associated with neurological manifestations, skin rash, hair loss and metabolic disturbances that are thought to relate to the various carboxylase deficiencies (metabolic ketoacidosis with lactic acidosis). It has also been suggested that biotin deficiency is associated with protein malnutrition, and that marginal biotin deficiency in pregnant women may be teratogenic. Biotin acts as a carboxyl carrier in carboxylation reactions. There are four biotin-dependent carboxylases in mammals: those of propionyl-CoA (PCC), 3-methylcrotonyl-CoA (MCC), pyruvate (PC) and acetyl-CoA carboxylases (isoforms ACC-1 and ACC-2). All but ACC-2 are mitochondrial enzymes. The biotin moiety is covalently bound to the epsilon amino group of a Lysine residue in each of these carboxylases in a domain 60-80 amino acids long. The domain is structurally similar among carboxylases from bacteria to mammals. There are four biotin-dependent carboxylases in mammals: those of propionyl-CoA (PCC), 3-methylcrotonyl-CoA (MCC), pyruvate (PC) and acetyl-CoA carboxylases (isoforms ACC-1 and ACC-2). All but ACC-2 are mitochondrial enzymes. The biotin moiety is covalently bound to the epsilon amino group of a Lys residue in each of these carboxylases in a domain 60-80 amino acids long. The domain is structurally similar among carboxylases from bacteria to mammals. Evidence is emerging that biotin participates in processes other than classical carboxylation reactions. Specifically, novel roles for biotin in cell signaling, gene expression, and chromatin structure have been identified in recent years. Human cells accumulate biotin by using both the sodium-dependent multivitamin transporter and monocarboxylate transporter 1. These transporters and other biotin-binding proteins partition biotin to compartments involved in biotin signaling: cytoplasm, mitochondria, and nuclei. The activity of cell signals such as biotinyl-AMP, Sp1 and Sp3, nuclear factor (NF)-kappaB, and receptor tyrosine kinases depends on biotin supply. Consistent with a role for biotin and its catabolites in modulating these cell signals, greater than 2000 biotin-dependent genes have been identified in various human tissues. Many biotin-dependent gene products play roles in signal transduction and localize to the cell nucleus, consistent with a role for biotin in cell signaling. Posttranscriptional events related to ribosomal activity and protein folding may further contribute to effects of biotin on gene expression. Finally, research has shown that biotinidase and holocarboxylase synthetase mediate covalent binding of biotin to histones (DNA-binding proteins), affecting chromatin structure; at least seven biotinylation sites have been identified in human histones. Biotinylation of histones appears to play a role in cell proliferation, gene silencing, and the cellular response to DNA repair. Roles for biotin in cell signaling and chromatin structure are consistent with the notion that biotin has a unique significance in cell biology. (A7825, A7826). |
FRCD ID | F04729 |
CAS Number | 58-85-5 |
PubChem CID | 171548 |
Formula | C10H16N2O3S |
IUPAC Name | 5-[(3aS,4S,6aR)-2-oxo-1,3,3a,4,6,6a-hexahydrothieno[3,4-d]imidazol-4-yl]pentanoic acid |
InChI Key | YBJHBAHKTGYVGT-ZKWXMUAHSA-N |
InChI | InChI=1S/C10H16N2O3S/c13-8(14)4-2-1-3-7-9-6(5-16-7)11-10(15)12-9/h6-7,9H,1-5H2,(H,13,14)(H2,11,12,15)/t6-,7-,9-/m0/s1 |
Canonical SMILES | C1C2C(C(S1)CCCCC(=O)O)NC(=O)N2 |
Isomeric SMILES | C1[C@H]2[C@@H]([C@@H](S1)CCCCC(=O)O)NC(=O)N2 |
Wikipedia | Biotin |
Synonyms | d-biotin biotin vitamin H 58-85-5 coenzyme R Vitamin B7 Bios II Factor S Bioepiderm D(+)-Biotin |
Classifies | Animal Toxin |
Update Date | Nov 13, 2018 17:07 |
Chemical Taxonomy
Kingdom | Organic compounds |
Superclass | Organoheterocyclic compounds |
Class | Biotin and derivatives |
Subclass | Not available |
Intermediate Tree Nodes | Not available |
Direct Parent | Biotin and derivatives |
Alternative Parents |
|
Molecular Framework | Aliphatic heteropolycyclic compounds |
Substituents | Biotin - Imidazolyl carboxylic acid derivative - Medium-chain fatty acid - Heterocyclic fatty acid - Thia fatty acid - Fatty acid - Fatty acyl - Thiolane - 2-imidazoline - Isourea - Azacycle - Dialkylthioether - Organic 1,3-dipolar compound - Propargyl-type 1,3-dipolar organic compound - Carboximidamide - Carboxylic acid derivative - Thioether - Carboxylic acid - Monocarboxylic acid or derivatives - Organic nitrogen compound - Organonitrogen compound - Organopnictogen compound - Organooxygen compound - Organic oxygen compound - Organic oxide - Hydrocarbon derivative - Carbonyl group - Aliphatic heteropolycyclic compound |
Description | This compound belongs to the class of organic compounds known as biotin and derivatives. These are organic compounds containing a ureido (tetrahydroimidizalone) ring fused with a tetrahydrothiophene ring. |
Properties
Property Name | Property Value |
---|---|
Molecular Weight | 244.309 |
Hydrogen Bond Donor Count | 3 |
Hydrogen Bond Acceptor Count | 4 |
Rotatable Bond Count | 5 |
Complexity | 298 |
Monoisotopic Mass | 244.088 |
Exact Mass | 244.088 |
XLogP | 0.3 |
Formal Charge | 0 |
Heavy Atom Count | 16 |
Defined Atom Stereocenter Count | 3 |
Undefined Atom Stereocenter Count | 0 |
Defined Bond Stereocenter Count | 0 |
Undefined Bond Stereocenter Count | 0 |
Isotope Atom Count | 0 |
Covalently-Bonded Unit Count | 1 |
ADMET
Model | Result | Probability |
---|---|---|
Absorption | ||
Blood-Brain Barrier | BBB+ | 0.9383 |
Human Intestinal Absorption | HIA+ | 0.7395 |
Caco-2 Permeability | Caco2- | 0.7206 |
P-glycoprotein Substrate | Substrate | 0.6413 |
P-glycoprotein Inhibitor | Non-inhibitor | 0.9561 |
Non-inhibitor | 1.0000 | |
Renal Organic Cation Transporter | Non-inhibitor | 0.8803 |
Distribution | ||
Subcellular localization | Mitochondria | 0.7672 |
Metabolism | ||
CYP450 2C9 Substrate | Non-substrate | 0.7602 |
CYP450 2D6 Substrate | Non-substrate | 0.7872 |
CYP450 3A4 Substrate | Non-substrate | 0.6911 |
CYP450 1A2 Inhibitor | Non-inhibitor | 0.9046 |
CYP450 2C9 Inhibitor | Non-inhibitor | 0.9252 |
CYP450 2D6 Inhibitor | Non-inhibitor | 0.9231 |
CYP450 2C19 Inhibitor | Non-inhibitor | 0.9025 |
CYP450 3A4 Inhibitor | Non-inhibitor | 0.8959 |
CYP Inhibitory Promiscuity | Low CYP Inhibitory Promiscuity | 0.9762 |
Excretion | ||
Toxicity | ||
Human Ether-a-go-go-Related Gene Inhibition | Weak inhibitor | 0.9596 |
Non-inhibitor | 0.9145 | |
AMES Toxicity | Non AMES toxic | 0.9133 |
Carcinogens | Non-carcinogens | 0.9598 |
Fish Toxicity | High FHMT | 0.7316 |
Tetrahymena Pyriformis Toxicity | High TPT | 0.7604 |
Honey Bee Toxicity | Low HBT | 0.6080 |
Biodegradation | Not ready biodegradable | 0.8923 |
Acute Oral Toxicity | III | 0.6733 |
Carcinogenicity (Three-class) | Non-required | 0.6441 |
Model | Value | Unit |
---|---|---|
Absorption | ||
Aqueous solubility | -2.5732 | LogS |
Caco-2 Permeability | -0.0582 | LogPapp, cm/s |
Distribution | ||
Metabolism | ||
Excretion | ||
Toxicity | ||
Rat Acute Toxicity | 2.0581 | LD50, mol/kg |
Fish Toxicity | 2.3455 | pLC50, mg/L |
Tetrahymena Pyriformis Toxicity | -0.0482 | pIGC50, ug/L |
References
Title | Journal | Date | Pubmed ID |
---|---|---|---|
Quantum dot nanobead-based multiplexed immunochromatographic assay for simultaneous detection of aflatoxin B<sub>1</sub> and zearalenone. | Anal Chim Acta | 2018 Sep 26 | 29801605 |
Aptamer-mediated colorimetric method for rapid and sensitive detection ofchloramphenicol in food. | Food Chem | 2018 Sep 15 | 29699664 |
A direct determination of AFBs in vinegar by aptamer-based surface plasmon resonance biosensor. | Toxicon | 2018 May | 29567102 |
Application of the biotin-labeled toxin mutant for affinity isolation of associated proteins in the mammalian cells. | J Biosci Bioeng | 2018 May | 29291913 |
Effects of a combination of plant bioactive lipid compounds and biotin comparedwith monensin on body condition, energy metabolism and milk performance intransition dairy cows. | PLoS One | 2018 Mar 27 | 29584764 |
Highly affine and selective aptamers against cholera toxin as capture elements in magnetic bead-based sandwich ELAA. | J Biotechnol | 2018 Mar 10 | 29408200 |
Additional Progress in the Development and Application of a Direct, RapidImmunohistochemical Test for Rabies Diagnosis. | Vet Sci | 2018 Jun 20 | 29925781 |
Fluorescent nanodiamond-bacteriophage conjugates maintain host specificity. | Biotechnol Bioeng | 2018 Jun | 29460442 |
A Lateral Flow Strip Based Aptasensor for Detection of Ochratoxin A in Corn Samples. | Molecules | 2018 Jan 31 | 29385022 |
Dual-competitive lateral flow aptasensor for detection of aflatoxin B<sub>1</sub> in food and feedstuffs. | J Hazard Mater | 2018 Feb 15 | 29055198 |
Biotin-exposure-based immunomagnetic separation coupled with nucleic acid lateralflow biosensor for visibly detecting viable Listeria monocytogenes. | Anal Chim Acta | 2018 Aug 9 | 29534795 |
Recombinase Polymerase Amplification Combined with Lateral Flow Strip forListeria monocytogenes Detection in Food. | J Food Sci | 2018 Apr | 29524216 |
Consumed Foodstuffs Have a Crucial Impact on the Toxic Activity of Enteropathogenic <i>Bacillus cereus</i>. | Front Microbiol | 2018 | 30174669 |
Untargeted metabolomics of fresh and heat treatment Tiger nut (Cyperus esculentusL.) milks reveals further insight into food quality and nutrition. | J Chromatogr A | 2017 Sep 8 | 28768579 |
Ultrasensitive SERS detection of Bacillus thuringiensis special gene based onAu@Ag NRs and magnetic beads. | Biosens Bioelectron | 2017 Jun 15 | 27839730 |
Study on synthesis and bioactivity of biotinylated emodin. | Appl Microbiol Biotechnol | 2017 Jul | 28386632 |
Physiochemical and cytotoxicity study of TPGS stabilized nanoemulsion designed by ultrasonication method. | Ultrason Sonochem | 2017 Jan | 27773233 |
Cry11Aa Interacts with the ATP-Binding Protein from Culex quinquefasciatus To Improve the Toxicity. | J Agric Food Chem | 2017 Dec 20 | 29215274 |
A double-blinded, randomized, controlled, crossover evaluation of a zincmethionine supplement as an adjunctive treatment for canine atopic dermatitis. | Vet Dermatol | 2017 Dec | 28736909 |
Diagnostic microarray for 14 water and foodborne pathogens using a flatbedscanner. | J Microbiol Methods | 2017 Aug | 28438642 |
Targets
- General Function:
- Methylcrotonoyl-coa carboxylase activity
- Specific Function:
- Carboxyltransferase subunit of the 3-methylcrotonyl-CoA carboxylase, an enzyme that catalyzes the conversion of 3-methylcrotonyl-CoA to 3-methylglutaconyl-CoA, a critical step for leucine and isovaleric acid catabolism.
- Gene Name:
- MCCC2
- Uniprot ID:
- Q9HCC0
- Molecular Weight:
- 61332.65 Da
- Mechanism of Action:
- Biotin is necessary for the proper functioning of enzymes that transport carboxyl units and fix carbon dioxide, and is required for various metabolic functions, including gluconeogenesis, lipogenesis, fatty acid biosynthesis, propionate metabolism, and catabolism of branched-chain amino acids.
References
- Jitrapakdee S, Surinya KH, Adina-Zada A, Polyak SW, Stojkoski C, Smyth R, Booker GW, Cleland WW, Attwood PV, Wallace JC: Conserved Glu40 and Glu433 of the biotin carboxylase domain of yeast pyruvate carboxylase I isoenzyme are essential for the association of tetramers. Int J Biochem Cell Biol. 2007;39(11):2120-34. Epub 2007 Jun 27. [17659996 ]
- General Function:
- Propionyl-coa carboxylase activity
- Gene Name:
- PCCA
- Uniprot ID:
- P05165
- Molecular Weight:
- 80058.295 Da
- Mechanism of Action:
- Biotin is necessary for the proper functioning of enzymes that transport carboxyl units and fix carbon dioxide, and is required for various metabolic functions, including gluconeogenesis, lipogenesis, fatty acid biosynthesis, propionate metabolism, and catabolism of branched-chain amino acids.
References
- Overington JP, Al-Lazikani B, Hopkins AL: How many drug targets are there? Nat Rev Drug Discov. 2006 Dec;5(12):993-6. [17139284 ]
- General Function:
- Propionyl-coa carboxylase activity
- Gene Name:
- PCCB
- Uniprot ID:
- P05166
- Molecular Weight:
- 58215.13 Da
- Mechanism of Action:
- Biotin is necessary for the proper functioning of enzymes that transport carboxyl units and fix carbon dioxide, and is required for various metabolic functions, including gluconeogenesis, lipogenesis, fatty acid biosynthesis, propionate metabolism, and catabolism of branched-chain amino acids.
References
- Overington JP, Al-Lazikani B, Hopkins AL: How many drug targets are there? Nat Rev Drug Discov. 2006 Dec;5(12):993-6. [17139284 ]
- General Function:
- Sodium-dependent multivitamin transmembrane transporter activity
- Specific Function:
- Transports pantothenate, biotin and lipoate in the presence of sodium.
- Gene Name:
- SLC5A6
- Uniprot ID:
- Q9Y289
- Molecular Weight:
- 68641.27 Da
- Mechanism of Action:
- Biotin is necessary for the proper functioning of enzymes that transport carboxyl units and fix carbon dioxide, and is required for various metabolic functions, including gluconeogenesis, lipogenesis, fatty acid biosynthesis, propionate metabolism, and catabolism of branched-chain amino acids.
References
- Luo S, Kansara VS, Zhu X, Mandava NK, Pal D, Mitra AK: Functional characterization of sodium-dependent multivitamin transporter in MDCK-MDR1 cells and its utilization as a target for drug delivery. Mol Pharm. 2006 May-Jun;3(3):329-39. [16749865 ]
- General Function:
- Enzyme binding
- Specific Function:
- Post-translational modification of specific protein by attachment of biotin. Acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
- Gene Name:
- HLCS
- Uniprot ID:
- P50747
- Molecular Weight:
- 80759.345 Da
- Mechanism of Action:
- Biotin is necessary for the proper functioning of enzymes that transport carboxyl units and fix carbon dioxide, and is required for various metabolic functions, including gluconeogenesis, lipogenesis, fatty acid biosynthesis, propionate metabolism, and catabolism of branched-chain amino acids.
References
- Velazquez-Arellano A: From an inborn error patient to a search for regulatory meaning: a biotin conducted voyage. Mol Genet Metab. 2006 Mar;87(3):194-7. Epub 2005 Dec 15. [16359899 ]
- General Function:
- Methylcrotonoyl-coa carboxylase activity
- Specific Function:
- Biotin-attachment subunit of the 3-methylcrotonyl-CoA carboxylase, an enzyme that catalyzes the conversion of 3-methylcrotonyl-CoA to 3-methylglutaconyl-CoA, a critical step for leucine and isovaleric acid catabolism.
- Gene Name:
- MCCC1
- Uniprot ID:
- Q96RQ3
- Molecular Weight:
- 80472.45 Da
- Mechanism of Action:
- Biotin is necessary for the proper functioning of enzymes that transport carboxyl units and fix carbon dioxide, and is required for various metabolic functions, including gluconeogenesis, lipogenesis, fatty acid biosynthesis, propionate metabolism, and catabolism of branched-chain amino acids.
References
- Friebel D, von der Hagen M, Baumgartner ER, Fowler B, Hahn G, Feyh P, Heubner G, Baumgartner MR, Hoffmann GF: The first case of 3-methylcrotonyl-CoA carboxylase (MCC) deficiency responsive to biotin. Neuropediatrics. 2006 Apr;37(2):72-8. [16773504 ]
- General Function:
- Syntaxin binding
- Specific Function:
- Non-receptor tyrosine-protein kinase that plays a role in many key processes linked to cell growth and survival such as cytoskeleton remodeling in response to extracellular stimuli, cell motility and adhesion, receptor endocytosis, autophagy, DNA damage response and apoptosis. Coordinates actin remodeling through tyrosine phosphorylation of proteins controlling cytoskeleton dynamics like WASF3 (involved in branch formation); ANXA1 (involved in membrane anchoring); DBN1, DBNL, CTTN, RAPH1 and ENAH (involved in signaling); or MAPT and PXN (microtubule-binding proteins). Phosphorylation of WASF3 is critical for the stimulation of lamellipodia formation and cell migration. Involved in the regulation of cell adhesion and motility through phosphorylation of key regulators of these processes such as BCAR1, CRK, CRKL, DOK1, EFS or NEDD9. Phosphorylates multiple receptor tyrosine kinases and more particularly promotes endocytosis of EGFR, facilitates the formation of neuromuscular synapses through MUSK, inhibits PDGFRB-mediated chemotaxis and modulates the endocytosis of activated B-cell receptor complexes. Other substrates which are involved in endocytosis regulation are the caveolin (CAV1) and RIN1. Moreover, ABL1 regulates the CBL family of ubiquitin ligases that drive receptor down-regulation and actin remodeling. Phosphorylation of CBL leads to increased EGFR stability. Involved in late-stage autophagy by regulating positively the trafficking and function of lysosomal components. ABL1 targets to mitochondria in response to oxidative stress and thereby mediates mitochondrial dysfunction and cell death. ABL1 is also translocated in the nucleus where it has DNA-binding activity and is involved in DNA-damage response and apoptosis. Many substrates are known mediators of DNA repair: DDB1, DDB2, ERCC3, ERCC6, RAD9A, RAD51, RAD52 or WRN. Activates the proapoptotic pathway when the DNA damage is too severe to be repaired. Phosphorylates TP73, a primary regulator for this type of damage-induced apoptosis. Phosphorylates the caspase CASP9 on 'Tyr-153' and regulates its processing in the apoptotic response to DNA damage. Phosphorylates PSMA7 that leads to an inhibition of proteasomal activity and cell cycle transition blocks. ABL1 acts also as a regulator of multiple pathological signaling cascades during infection. Several known tyrosine-phosphorylated microbial proteins have been identified as ABL1 substrates. This is the case of A36R of Vaccinia virus, Tir (translocated intimin receptor) of pathogenic E.coli and possibly Citrobacter, CagA (cytotoxin-associated gene A) of H.pylori, or AnkA (ankyrin repeat-containing protein A) of A.phagocytophilum. Pathogens can highjack ABL1 kinase signaling to reorganize the host actin cytoskeleton for multiple purposes, like facilitating intracellular movement and host cell exit. Finally, functions as its own regulator through autocatalytic activity as well as through phosphorylation of its inhibitor, ABI1.
- Gene Name:
- ABL1
- Uniprot ID:
- P00519
- Molecular Weight:
- 122871.435 Da
References
- Liu T, Lin Y, Wen X, Jorissen RN, Gilson MK: BindingDB: a web-accessible database of experimentally determined protein-ligand binding affinities. Nucleic Acids Res. 2007 Jan;35(Database issue):D198-201. Epub 2006 Dec 1. [17145705 ]
- General Function:
- Metal ion binding
- Specific Function:
- Catalyzes the rate-limiting reaction in the biogenesis of long-chain fatty acids. Carries out three functions: biotin carboxyl carrier protein, biotin carboxylase and carboxyltransferase.
- Gene Name:
- ACACA
- Uniprot ID:
- Q13085
- Molecular Weight:
- 265551.725 Da
- Mechanism of Action:
- Biotin is necessary for the proper functioning of enzymes that transport carboxyl units and fix carbon dioxide, and is required for various metabolic functions, including gluconeogenesis, lipogenesis, fatty acid biosynthesis, propionate metabolism, and catabolism of branched-chain amino acids.
References
- Bilder P, Lightle S, Bainbridge G, Ohren J, Finzel B, Sun F, Holley S, Al-Kassim L, Spessard C, Melnick M, Newcomer M, Waldrop GL: The structure of the carboxyltransferase component of acetyl-coA carboxylase reveals a zinc-binding motif unique to the bacterial enzyme. Biochemistry. 2006 Feb 14;45(6):1712-22. [16460018 ]
- General Function:
- Pyruvate carboxylase activity
- Specific Function:
- Pyruvate carboxylase catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. Catalyzes in a tissue specific manner, the initial reactions of glucose (liver, kidney) and lipid (adipose tissue, liver, brain) synthesis from pyruvate.
- Gene Name:
- PC
- Uniprot ID:
- P11498
- Molecular Weight:
- 129632.565 Da
- Mechanism of Action:
- Biotin is necessary for the proper functioning of enzymes that transport carboxyl units and fix carbon dioxide, and is required for various metabolic functions, including gluconeogenesis, lipogenesis, fatty acid biosynthesis, propionate metabolism, and catabolism of branched-chain amino acids.
References
- Liu L, Li Y, Zhu Y, Du G, Chen J: Redistribution of carbon flux in Torulopsis glabrata by altering vitamin and calcium level. Metab Eng. 2007 Jan;9(1):21-9. Epub 2006 Aug 12. [17008113 ]
- General Function:
- Metal ion binding
- Specific Function:
- Catalyzes the ATP-dependent carboxylation of acetyl-CoA to malonyl-CoA. Carries out three functions: biotin carboxyl carrier protein, biotin carboxylase and carboxyltransferase. Involved in inhibition of fatty acid and glucose oxidation and enhancement of fat storage (By similarity). May play a role in regulation of mitochondrial fatty acid oxidation through malonyl-CoA-dependent inhibition of carnitine palmitoyltransferase 1 (By similarity).
- Gene Name:
- ACACB
- Uniprot ID:
- O00763
- Molecular Weight:
- 276538.575 Da
- Mechanism of Action:
- Biotin is necessary for the proper functioning of enzymes that transport carboxyl units and fix carbon dioxide, and is required for various metabolic functions, including gluconeogenesis, lipogenesis, fatty acid biosynthesis, propionate metabolism, and catabolism of branched-chain amino acids.
References
- Liu Y, Zalameda L, Kim KW, Wang M, McCarter JD: Discovery of acetyl-coenzyme A carboxylase 2 inhibitors: comparison of a fluorescence intensity-based phosphate assay and a fluorescence polarization-based ADP Assay for high-throughput screening. Assay Drug Dev Technol. 2007 Apr;5(2):225-35. [17477831 ]