Pentosidine
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Basic Info
| Common Name | Pentosidine(F05261) |
| 2D Structure | |
| Description | Pentosidine is a uremic toxin. Uremic toxins can be subdivided into three major groups based upon their chemical and physical characteristics: 1) small, water-soluble, non-protein-bound compounds, such as urea; 2) small, lipid-soluble and/or protein-bound compounds, such as the phenols and 3) larger so-called middle-molecules, such as beta2-microglobulin. Chronic exposure of uremic toxins can lead to a number of conditions including renal damage, chronic kidney disease and cardiovascular disease. |
| FRCD ID | F05261 |
| CAS Number | 124505-87-9 |
| PubChem CID | 119593 |
| Formula | C17H26N6O4 |
| IUPAC Name | (2S)-2-amino-6-[2-[[(4S)-4-amino-4-carboxybutyl]amino]imidazo[4,5-b]pyridin-4-yl]hexanoic acid |
| InChI Key | AYEKKSTZQYEZPU-RYUDHWBXSA-N |
| InChI | InChI=1S/C17H26N6O4/c18-11(15(24)25)5-1-2-9-23-10-4-7-13-14(23)22-17(21-13)20-8-3-6-12(19)16(26)27/h4,7,10-12H,1-3,5-6,8-9,18-19H2,(H,20,21)(H,24,25)(H,26,27)/t11-,12-/m0/s1 |
| Canonical SMILES | C1=CN(C2=NC(=NC2=C1)NCCCC(C(=O)O)N)CCCCC(C(=O)O)N |
| Isomeric SMILES | C1=CN(C2=NC(=NC2=C1)NCCC[C@@H](C(=O)O)N)CCCC[C@@H](C(=O)O)N |
| Wikipedia | Pentosidine |
| Synonyms |
Pentosidine
124505-87-9
UNII-BJ4I2X2CQJ
BJ4I2X2CQJ
CHEBI:59951
Epitope ID:140093
AC1L3P3B
SCHEMBL51200
CTK4B3948
DTXSID60154417
|
| Classifies |
Predicted: Pesticide
|
| Update Date | Nov 13, 2018 17:07 |
Chemical Taxonomy
| Kingdom | Organic compounds |
| Superclass | Organic acids and derivatives |
| Class | Carboxylic acids and derivatives |
| Subclass | Amino acids, peptides, and analogues |
| Intermediate Tree Nodes | Amino acids and derivatives - Alpha amino acids and derivatives - Alpha amino acids |
| Direct Parent | L-alpha-amino acids |
| Alternative Parents |
|
| Molecular Framework | Aromatic heteropolycyclic compounds |
| Substituents | L-alpha-amino acid - Imidazopyridine - Medium-chain fatty acid - Amino fatty acid - Heterocyclic fatty acid - Dicarboxylic acid or derivatives - Fatty acyl - Fatty acid - Pyridine - Azole - Heteroaromatic compound - Imidazole - Amino acid - Carboxylic acid - Azacycle - Organoheterocyclic compound - Organonitrogen compound - Primary aliphatic amine - Organic nitrogen compound - Amine - Hydrocarbon derivative - Organic oxide - Carbonyl group - Organopnictogen compound - Organooxygen compound - Primary amine - Organic oxygen compound - Aromatic heteropolycyclic compound |
| Description | This compound belongs to the class of organic compounds known as l-alpha-amino acids. These are alpha amino acids which have the L-configuration of the alpha-carbon atom. |
Properties
| Property Name | Property Value |
|---|---|
| Molecular Weight | 378.433 |
| Hydrogen Bond Donor Count | 5 |
| Hydrogen Bond Acceptor Count | 9 |
| Rotatable Bond Count | 12 |
| Complexity | 494 |
| Monoisotopic Mass | 378.202 |
| Exact Mass | 378.202 |
| XLogP | -4.7 |
| Formal Charge | 0 |
| Heavy Atom Count | 27 |
| Defined Atom Stereocenter Count | 2 |
| Undefined Atom Stereocenter Count | 0 |
| Defined Bond Stereocenter Count | 0 |
| Undefined Bond Stereocenter Count | 0 |
| Isotope Atom Count | 0 |
| Covalently-Bonded Unit Count | 1 |
ADMET
| Model | Result | Probability |
|---|---|---|
| Absorption | ||
| Blood-Brain Barrier | BBB- | 0.5626 |
| Human Intestinal Absorption | HIA+ | 0.9267 |
| Caco-2 Permeability | Caco2- | 0.7865 |
| P-glycoprotein Substrate | Substrate | 0.7267 |
| P-glycoprotein Inhibitor | Non-inhibitor | 0.9768 |
| Non-inhibitor | 0.9845 | |
| Renal Organic Cation Transporter | Non-inhibitor | 0.8298 |
| Distribution | ||
| Subcellular localization | Nucleus | 0.3279 |
| Metabolism | ||
| CYP450 2C9 Substrate | Non-substrate | 0.8981 |
| CYP450 2D6 Substrate | Non-substrate | 0.8004 |
| CYP450 3A4 Substrate | Non-substrate | 0.7609 |
| CYP450 1A2 Inhibitor | Non-inhibitor | 0.8789 |
| CYP450 2C9 Inhibitor | Non-inhibitor | 0.9158 |
| CYP450 2D6 Inhibitor | Non-inhibitor | 0.9247 |
| CYP450 2C19 Inhibitor | Non-inhibitor | 0.9399 |
| CYP450 3A4 Inhibitor | Non-inhibitor | 0.9687 |
| CYP Inhibitory Promiscuity | Low CYP Inhibitory Promiscuity | 0.9884 |
| Excretion | ||
| Toxicity | ||
| Human Ether-a-go-go-Related Gene Inhibition | Weak inhibitor | 0.7892 |
| Non-inhibitor | 0.8891 | |
| AMES Toxicity | Non AMES toxic | 0.6626 |
| Carcinogens | Non-carcinogens | 0.9448 |
| Fish Toxicity | High FHMT | 0.6780 |
| Tetrahymena Pyriformis Toxicity | High TPT | 0.7011 |
| Honey Bee Toxicity | Low HBT | 0.8186 |
| Biodegradation | Not ready biodegradable | 0.8831 |
| Acute Oral Toxicity | III | 0.5881 |
| Carcinogenicity (Three-class) | Non-required | 0.6027 |
| Model | Value | Unit |
|---|---|---|
| Absorption | ||
| Aqueous solubility | -2.6045 | LogS |
| Caco-2 Permeability | -0.4291 | LogPapp, cm/s |
| Distribution | ||
| Metabolism | ||
| Excretion | ||
| Toxicity | ||
| Rat Acute Toxicity | 2.3325 | LD50, mol/kg |
| Fish Toxicity | 1.8978 | pLC50, mg/L |
| Tetrahymena Pyriformis Toxicity | 0.2333 | pIGC50, ug/L |
References
| Title | Journal | Date | Pubmed ID |
|---|---|---|---|
| Review of pentosidine and pyrraline in food and chemical models: formation,potential risks and determination. | J Sci Food Agric | 2018 Jul | 29280151 |
| Glycation Reactions of Casein Micelles. | J Agric Food Chem | 2016 Apr 13 | 27018258 |
| Glycyrrhizic acid attenuated glycative stress in kidney of diabetic mice through enhancing glyoxalase pathway. | Mol Nutr Food Res | 2014 Jul | 24585461 |
| The pentosidine concentration in human blood specimens is affected by heating. | Amino Acids | 2013 Jun | 22139436 |
| Effects of model Maillard compounds on bone characteristics and functionality. | J Sci Food Agric | 2013 Aug 30 | 23420603 |
| Anti-glycative and anti-inflammatory effects of protocatechuic acid in brain ofmice treated by D-galactose. | Food Chem Toxicol | 2012 Sep | 22687555 |
| Anti-glycative and anti-inflammatory effects of caffeic acid and ellagic acid in kidney of diabetic mice. | Mol Nutr Food Res | 2010 Mar | 19885845 |
| Advanced glycation end-product pentosidine accumulates in various tissues of ratswith high fructose intake. | Physiol Res | 2008 | 17298207 |
| [The metabolic, nutritional and toxicological consequences of ingested dietary Maillard reaction products: a literature review]. | J Soc Biol | 2007 | 17978754 |
| The effect of caloric restriction on glycation and glycoxidation in skin collagenof nonhuman primates. | J Gerontol A Biol Sci Med Sci | 2003 Jun | 12807921 |
| Accumulation of advanced glycation endproducts in aging male Fischer 344 ratsduring long-term feeding of various dietary carbohydrates. | J Nutr | 2000 May | 10801926 |
Targets
- General Function:
- Sodium-independent organic anion transmembrane transporter activity
- Specific Function:
- Plays an important role in the excretion/detoxification of endogenous and exogenous organic anions, especially from the brain and kidney. Involved in the transport basolateral of steviol, fexofenadine. Transports benzylpenicillin (PCG), estrone-3-sulfate (E1S), cimetidine (CMD), 2,4-dichloro-phenoxyacetate (2,4-D), p-amino-hippurate (PAH), acyclovir (ACV) and ochratoxin (OTA).
- Gene Name:
- SLC22A8
- Uniprot ID:
- Q8TCC7
- Molecular Weight:
- 59855.585 Da
References
- Schulz AM, Terne C, Jankowski V, Cohen G, Schaefer M, Boehringer F, Tepel M, Kunkel D, Zidek W, Jankowski J: Modulation of NADPH oxidase activity by known uraemic retention solutes. Eur J Clin Invest. 2014 Aug;44(8):802-11. doi: 10.1111/eci.12297. [25041433 ]
- General Function:
- Vitamin d binding
- Specific Function:
- May have weak glycosidase activity towards glucuronylated steroids. However, it lacks essential active site Glu residues at positions 239 and 872, suggesting it may be inactive as a glycosidase in vivo. May be involved in the regulation of calcium and phosphorus homeostasis by inhibiting the synthesis of active vitamin D (By similarity). Essential factor for the specific interaction between FGF23 and FGFR1 (By similarity).The Klotho peptide generated by cleavage of the membrane-bound isoform may be an anti-aging circulating hormone which would extend life span by inhibiting insulin/IGF1 signaling.
- Gene Name:
- KL
- Uniprot ID:
- Q9UEF7
- Molecular Weight:
- 116179.815 Da
References
- Schulz AM, Terne C, Jankowski V, Cohen G, Schaefer M, Boehringer F, Tepel M, Kunkel D, Zidek W, Jankowski J: Modulation of NADPH oxidase activity by known uraemic retention solutes. Eur J Clin Invest. 2014 Aug;44(8):802-11. doi: 10.1111/eci.12297. [25041433 ]
- General Function:
- Superoxide-generating nadph oxidase activity
- Specific Function:
- Constitutive NADPH oxidase which generates superoxide intracellularly upon formation of a complex with CYBA/p22phox. Regulates signaling cascades probably through phosphatases inhibition. May function as an oxygen sensor regulating the KCNK3/TASK-1 potassium channel and HIF1A activity. May regulate insulin signaling cascade. May play a role in apoptosis, bone resorption and lipolysaccharide-mediated activation of NFKB. May produce superoxide in the nucleus and play a role in regulating gene expression upon cell stimulation. Isoform 3 is not functional. Isoform 5 and isoform 6 display reduced activity.Isoform 4: Involved in redox signaling in vascular cells. Constitutively and NADPH-dependently generates reactive oxygen species (ROS). Modulates the nuclear activation of ERK1/2 and the ELK1 transcription factor, and is capable of inducing nuclear DNA damage. Displays an increased activity relative to isoform 1.
- Gene Name:
- NOX4
- Uniprot ID:
- Q9NPH5
- Molecular Weight:
- 66930.995 Da
References
- Schulz AM, Terne C, Jankowski V, Cohen G, Schaefer M, Boehringer F, Tepel M, Kunkel D, Zidek W, Jankowski J: Modulation of NADPH oxidase activity by known uraemic retention solutes. Eur J Clin Invest. 2014 Aug;44(8):802-11. doi: 10.1111/eci.12297. [25041433 ]