Basic Info

Common NamePentosidine(F05261)
2D Structure
Description

Pentosidine is a uremic toxin. Uremic toxins can be subdivided into three major groups based upon their chemical and physical characteristics: 1) small, water-soluble, non-protein-bound compounds, such as urea; 2) small, lipid-soluble and/or protein-bound compounds, such as the phenols and 3) larger so-called middle-molecules, such as beta2-microglobulin. Chronic exposure of uremic toxins can lead to a number of conditions including renal damage, chronic kidney disease and cardiovascular disease.
Pentosidine is a carbohydrate-derived advanced glycation end products (AGEs) that is considerably elevated in uremic patients. Derived from ribose, a pentose, pentosidine forms fluorescent cross-links between the arginine and lysine residues in collagen. It is formed in a reaction of the amino acids with the Maillard reaction products of ribose. Although it is present only in trace concentrations among tissue proteins, it is useful for assessing cumulative damage to proteins-advanced glycation endproductsThis compound per se has no biological activities but is highly correlated to the levels of precursors of carbonyl compounds, and for this reason is considered a reliable surrogate marker for AGEs. The modification of proteins in uremia is not limited to AGEs, since advanced lipoxidation end products are also demonstrable in plasma proteins in uremia. The accumulation of these compounds does not seem to be dependent only on the decline of renal function. Carbonyl precursors of AGEs and advanced lipoxidation end products are markedly elevated in uremic patients. Preliminary cross-sectional studies in haemodialysis patients seem to indicate that the AGEs and carbonyl stress may be involved in the pathogenesis of alterations in left ventricular geometry and function in these patients. The plasma pentosidine level in diabetic nephropathy was found to be determined by factors such as renal function control of glucose and the patient's age; of these, renal function was the most critical factor. The pathological role of AGEs in diabetic nephropathy, is in the expanded mesangial area of diffuse diabetic glomerulosclerosis, with nodular lesions, characteristic of diabetic nephropathy. These suggests a potential link of AGEs accumulation, which may be determined by renal function, control of glucose and age, to renal tissue damage in diabetic nephropathy. The rate of accumulation of glycoxidation products is accelerated in diabetes and age-adjusted concentrations of two advanced glycation end-products (AGE) in tissue proteins, N(6)-carboxymethyllysine and pentosidine, correlate with the severity of complication in diabetic patients. (A3291, A3292, A3293).

FRCD IDF05261
CAS Number124505-87-9
PubChem CID119593
FormulaC17H26N6O4
IUPAC Name

(2S)-2-amino-6-[2-[[(4S)-4-amino-4-carboxybutyl]amino]imidazo[4,5-b]pyridin-4-yl]hexanoic acid

InChI Key

AYEKKSTZQYEZPU-RYUDHWBXSA-N

InChI

InChI=1S/C17H26N6O4/c18-11(15(24)25)5-1-2-9-23-10-4-7-13-14(23)22-17(21-13)20-8-3-6-12(19)16(26)27/h4,7,10-12H,1-3,5-6,8-9,18-19H2,(H,20,21)(H,24,25)(H,26,27)/t11-,12-/m0/s1

Canonical SMILES

C1=CN(C2=NC(=NC2=C1)NCCCC(C(=O)O)N)CCCCC(C(=O)O)N

Isomeric SMILES

C1=CN(C2=NC(=NC2=C1)NCCC[C@@H](C(=O)O)N)CCCC[C@@H](C(=O)O)N

WikipediaPentosidine
Synonyms
        
            Pentosidine
        
            124505-87-9
        
            UNII-BJ4I2X2CQJ
        
            BJ4I2X2CQJ
        
            CHEBI:59951
        
            Epitope ID:140093
        
            AC1L3P3B
        
            SCHEMBL51200
        
            CTK4B3948
        
            DTXSID60154417
        
Classifies
                

                  
                    Predicted: Pesticide
                  

                
        
Update DateNov 13, 2018 17:07

Chemical Taxonomy

KingdomOrganic compounds
SuperclassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
SubclassAmino acids, peptides, and analogues
Intermediate Tree NodesAmino acids and derivatives - Alpha amino acids and derivatives - Alpha amino acids
Direct ParentL-alpha-amino acids
Alternative Parents
Molecular FrameworkAromatic heteropolycyclic compounds
SubstituentsL-alpha-amino acid - Imidazopyridine - Medium-chain fatty acid - Amino fatty acid - Heterocyclic fatty acid - Dicarboxylic acid or derivatives - Fatty acyl - Fatty acid - Pyridine - Azole - Heteroaromatic compound - Imidazole - Amino acid - Carboxylic acid - Azacycle - Organoheterocyclic compound - Organonitrogen compound - Primary aliphatic amine - Organic nitrogen compound - Amine - Hydrocarbon derivative - Organic oxide - Carbonyl group - Organopnictogen compound - Organooxygen compound - Primary amine - Organic oxygen compound - Aromatic heteropolycyclic compound
DescriptionThis compound belongs to the class of organic compounds known as l-alpha-amino acids. These are alpha amino acids which have the L-configuration of the alpha-carbon atom.

Properties

Property NameProperty Value
Molecular Weight378.433
Hydrogen Bond Donor Count5
Hydrogen Bond Acceptor Count9
Rotatable Bond Count12
Complexity494
Monoisotopic Mass378.202
Exact Mass378.202
XLogP-4.7
Formal Charge0
Heavy Atom Count27
Defined Atom Stereocenter Count2
Undefined Atom Stereocenter Count0
Defined Bond Stereocenter Count0
Undefined Bond Stereocenter Count0
Isotope Atom Count0
Covalently-Bonded Unit Count1

ADMET

Model Result Probability
Absorption
Blood-Brain BarrierBBB-0.5626
Human Intestinal AbsorptionHIA+0.9267
Caco-2 PermeabilityCaco2-0.7865
P-glycoprotein SubstrateSubstrate0.7267
P-glycoprotein InhibitorNon-inhibitor0.9768
Non-inhibitor0.9845
Renal Organic Cation TransporterNon-inhibitor0.8298
Distribution
Subcellular localizationNucleus0.3279
Metabolism
CYP450 2C9 SubstrateNon-substrate0.8981
CYP450 2D6 SubstrateNon-substrate0.8004
CYP450 3A4 SubstrateNon-substrate0.7609
CYP450 1A2 InhibitorNon-inhibitor0.8789
CYP450 2C9 InhibitorNon-inhibitor0.9158
CYP450 2D6 InhibitorNon-inhibitor0.9247
CYP450 2C19 InhibitorNon-inhibitor0.9399
CYP450 3A4 InhibitorNon-inhibitor0.9687
CYP Inhibitory PromiscuityLow CYP Inhibitory Promiscuity0.9884
Excretion
Toxicity
Human Ether-a-go-go-Related Gene InhibitionWeak inhibitor0.7892
Non-inhibitor0.8891
AMES ToxicityNon AMES toxic0.6626
CarcinogensNon-carcinogens0.9448
Fish ToxicityHigh FHMT0.6780
Tetrahymena Pyriformis ToxicityHigh TPT0.7011
Honey Bee ToxicityLow HBT0.8186
BiodegradationNot ready biodegradable0.8831
Acute Oral ToxicityIII0.5881
Carcinogenicity (Three-class)Non-required0.6027

Model Value Unit
Absorption
Aqueous solubility-2.6045LogS
Caco-2 Permeability-0.4291LogPapp, cm/s
Distribution
Metabolism
Excretion
Toxicity
Rat Acute Toxicity2.3325LD50, mol/kg
Fish Toxicity1.8978pLC50, mg/L
Tetrahymena Pyriformis Toxicity0.2333pIGC50, ug/L

References

TitleJournalDatePubmed ID
Review of pentosidine and pyrraline in food and chemical models: formation,potential risks and determination.J Sci Food Agric2018 Jul29280151
Glycation Reactions of Casein Micelles.J Agric Food Chem2016 Apr 1327018258
Glycyrrhizic acid attenuated glycative stress in kidney of diabetic mice through enhancing glyoxalase pathway.Mol Nutr Food Res2014 Jul24585461
The pentosidine concentration in human blood specimens is affected by heating.Amino Acids2013 Jun22139436
Effects of model Maillard compounds on bone characteristics and functionality.J Sci Food Agric2013 Aug 3023420603
Anti-glycative and anti-inflammatory effects of protocatechuic acid in brain ofmice treated by D-galactose.Food Chem Toxicol2012 Sep22687555
Anti-glycative and anti-inflammatory effects of caffeic acid and ellagic acid in kidney of diabetic mice.Mol Nutr Food Res2010 Mar19885845
Advanced glycation end-product pentosidine accumulates in various tissues of ratswith high fructose intake.Physiol Res200817298207
[The metabolic, nutritional and toxicological consequences of ingested dietary Maillard reaction products: a literature review].J Soc Biol200717978754
The effect of caloric restriction on glycation and glycoxidation in skin collagenof nonhuman primates.J Gerontol A Biol Sci Med Sci2003 Jun12807921
Accumulation of advanced glycation endproducts in aging male Fischer 344 ratsduring long-term feeding of various dietary carbohydrates.J Nutr2000 May10801926

Targets

General Function:
Sodium-independent organic anion transmembrane transporter activity
Specific Function:
Plays an important role in the excretion/detoxification of endogenous and exogenous organic anions, especially from the brain and kidney. Involved in the transport basolateral of steviol, fexofenadine. Transports benzylpenicillin (PCG), estrone-3-sulfate (E1S), cimetidine (CMD), 2,4-dichloro-phenoxyacetate (2,4-D), p-amino-hippurate (PAH), acyclovir (ACV) and ochratoxin (OTA).
Gene Name:
SLC22A8
Uniprot ID:
Q8TCC7
Molecular Weight:
59855.585 Da
References
  1. Schulz AM, Terne C, Jankowski V, Cohen G, Schaefer M, Boehringer F, Tepel M, Kunkel D, Zidek W, Jankowski J: Modulation of NADPH oxidase activity by known uraemic retention solutes. Eur J Clin Invest. 2014 Aug;44(8):802-11. doi: 10.1111/eci.12297. [25041433 ]
General Function:
Vitamin d binding
Specific Function:
May have weak glycosidase activity towards glucuronylated steroids. However, it lacks essential active site Glu residues at positions 239 and 872, suggesting it may be inactive as a glycosidase in vivo. May be involved in the regulation of calcium and phosphorus homeostasis by inhibiting the synthesis of active vitamin D (By similarity). Essential factor for the specific interaction between FGF23 and FGFR1 (By similarity).The Klotho peptide generated by cleavage of the membrane-bound isoform may be an anti-aging circulating hormone which would extend life span by inhibiting insulin/IGF1 signaling.
Gene Name:
KL
Uniprot ID:
Q9UEF7
Molecular Weight:
116179.815 Da
References
  1. Schulz AM, Terne C, Jankowski V, Cohen G, Schaefer M, Boehringer F, Tepel M, Kunkel D, Zidek W, Jankowski J: Modulation of NADPH oxidase activity by known uraemic retention solutes. Eur J Clin Invest. 2014 Aug;44(8):802-11. doi: 10.1111/eci.12297. [25041433 ]
General Function:
Superoxide-generating nadph oxidase activity
Specific Function:
Constitutive NADPH oxidase which generates superoxide intracellularly upon formation of a complex with CYBA/p22phox. Regulates signaling cascades probably through phosphatases inhibition. May function as an oxygen sensor regulating the KCNK3/TASK-1 potassium channel and HIF1A activity. May regulate insulin signaling cascade. May play a role in apoptosis, bone resorption and lipolysaccharide-mediated activation of NFKB. May produce superoxide in the nucleus and play a role in regulating gene expression upon cell stimulation. Isoform 3 is not functional. Isoform 5 and isoform 6 display reduced activity.Isoform 4: Involved in redox signaling in vascular cells. Constitutively and NADPH-dependently generates reactive oxygen species (ROS). Modulates the nuclear activation of ERK1/2 and the ELK1 transcription factor, and is capable of inducing nuclear DNA damage. Displays an increased activity relative to isoform 1.
Gene Name:
NOX4
Uniprot ID:
Q9NPH5
Molecular Weight:
66930.995 Da
References
  1. Schulz AM, Terne C, Jankowski V, Cohen G, Schaefer M, Boehringer F, Tepel M, Kunkel D, Zidek W, Jankowski J: Modulation of NADPH oxidase activity by known uraemic retention solutes. Eur J Clin Invest. 2014 Aug;44(8):802-11. doi: 10.1111/eci.12297. [25041433 ]