Adenine
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Basic Info
Common Name | Adenine(F05317) |
2D Structure | |
Description | Adenine is a purine base. Adenine is found in both DNA and RNA. Adenine is a fundamental component of adenine nucleotides. Adenine forms adenosine, a nucleoside, when attached to ribose, and deoxyadenosine when attached to deoxyribose; it forms adenosine triphosphate (ATP), a nucleotide, when three phosphate groups are added to adenosine. Adenosine triphosphate is used in cellular metabolism as one of the basic methods of transferring chemical energy between chemical reactions. Purine inborn errors of metabolism (IEM) are serious hereditary disorders, which should be suspected in any case of neonatal fitting, failure to thrive, recurrent infections, neurological deficit, renal disease, self-mutilation and other manifestations. Investigation usually starts with uric acid (UA) determination in urine and plasma. (OMIM 300322, 229600, 603027, 232400, 232600, 232800, 201450, 220150, 232200, 162000, 164050, 278300). (A3372, A3373). |
FRCD ID | F05317 |
CAS Number | 73-24-5 |
PubChem CID | 190 |
Formula | C5H5N5 |
IUPAC Name | 7H-purin-6-amine |
InChI Key | GFFGJBXGBJISGV-UHFFFAOYSA-N |
InChI | InChI=1S/C5H5N5/c6-4-3-5(9-1-7-3)10-2-8-4/h1-2H,(H3,6,7,8,9,10) |
Canonical SMILES | C1=NC2=C(N1)C(=NC=N2)N |
Isomeric SMILES | C1=NC2=C(N1)C(=NC=N2)N |
Wikipedia | Adenine |
Synonyms | adenine 73-24-5 6-Aminopurine 1H-Purin-6-amine 9H-Purin-6-amine Vitamin B4 Adenin 7H-Purin-6-amine Adeninimine Leuco-4 |
Classifies | Animal Toxin |
Update Date | Nov 13, 2018 17:07 |
Chemical Taxonomy
Kingdom | Organic compounds |
Superclass | Organoheterocyclic compounds |
Class | Imidazopyrimidines |
Subclass | Purines and purine derivatives |
Intermediate Tree Nodes | Not available |
Direct Parent | 6-aminopurines |
Alternative Parents | |
Molecular Framework | Aromatic heteropolycyclic compounds |
Substituents | 6-aminopurine - Aminopyrimidine - Imidolactam - Pyrimidine - Heteroaromatic compound - Imidazole - Azole - Azacycle - Organic nitrogen compound - Organopnictogen compound - Hydrocarbon derivative - Primary amine - Organonitrogen compound - Amine - Aromatic heteropolycyclic compound |
Description | This compound belongs to the class of organic compounds known as 6-aminopurines. These are purines that carry an amino group at position 6. Purine is a bicyclic aromatic compound made up of a pyrimidine ring fused to an imidazole ring. |
Properties
Property Name | Property Value |
---|---|
Molecular Weight | 135.13 |
Hydrogen Bond Donor Count | 2 |
Hydrogen Bond Acceptor Count | 4 |
Rotatable Bond Count | 0 |
Complexity | 127 |
Monoisotopic Mass | 135.054 |
Exact Mass | 135.054 |
XLogP | -0.1 |
Formal Charge | 0 |
Heavy Atom Count | 10 |
Defined Atom Stereocenter Count | 0 |
Undefined Atom Stereocenter Count | 0 |
Defined Bond Stereocenter Count | 0 |
Undefined Bond Stereocenter Count | 0 |
Isotope Atom Count | 0 |
Covalently-Bonded Unit Count | 1 |
ADMET
Model | Result | Probability |
---|---|---|
Absorption | ||
Blood-Brain Barrier | BBB+ | 0.9395 |
Human Intestinal Absorption | HIA+ | 0.9733 |
Caco-2 Permeability | Caco2- | 0.5225 |
P-glycoprotein Substrate | Non-substrate | 0.6835 |
P-glycoprotein Inhibitor | Non-inhibitor | 0.9800 |
Non-inhibitor | 0.9805 | |
Renal Organic Cation Transporter | Non-inhibitor | 0.8573 |
Distribution | ||
Subcellular localization | Lysosome | 0.5193 |
Metabolism | ||
CYP450 2C9 Substrate | Non-substrate | 0.9144 |
CYP450 2D6 Substrate | Non-substrate | 0.8966 |
CYP450 3A4 Substrate | Non-substrate | 0.7957 |
CYP450 1A2 Inhibitor | Non-inhibitor | 0.6459 |
CYP450 2C9 Inhibitor | Non-inhibitor | 0.9567 |
CYP450 2D6 Inhibitor | Non-inhibitor | 0.9880 |
CYP450 2C19 Inhibitor | Non-inhibitor | 0.9441 |
CYP450 3A4 Inhibitor | Non-inhibitor | 0.9246 |
CYP Inhibitory Promiscuity | Low CYP Inhibitory Promiscuity | 0.9024 |
Excretion | ||
Toxicity | ||
Human Ether-a-go-go-Related Gene Inhibition | Weak inhibitor | 0.9646 |
Non-inhibitor | 0.9060 | |
AMES Toxicity | AMES toxic | 0.6746 |
Carcinogens | Non-carcinogens | 0.9197 |
Fish Toxicity | Low FHMT | 0.6922 |
Tetrahymena Pyriformis Toxicity | High TPT | 0.6563 |
Honey Bee Toxicity | Low HBT | 0.7754 |
Biodegradation | Not ready biodegradable | 0.9857 |
Acute Oral Toxicity | II | 0.5352 |
Carcinogenicity (Three-class) | Non-required | 0.4385 |
Model | Value | Unit |
---|---|---|
Absorption | ||
Aqueous solubility | -2.0572 | LogS |
Caco-2 Permeability | 0.4170 | LogPapp, cm/s |
Distribution | ||
Metabolism | ||
Excretion | ||
Toxicity | ||
Rat Acute Toxicity | 2.4381 | LD50, mol/kg |
Fish Toxicity | 2.2153 | pLC50, mg/L |
Tetrahymena Pyriformis Toxicity | -0.0779 | pIGC50, ug/L |
References
Title | Journal | Date | Pubmed ID |
---|---|---|---|
In vitro quality control analysis after processing and during storage of felinepacked red blood cells units. | BMC Vet Res | 2018 Apr 27 | 29699565 |
Mono-(2-ethylhexyl) phthalate induced ROS-dependent autophagic cell death in human vascular endothelial cells. | Toxicol In Vitro | 2017 Oct | 28655635 |
Somatic cell selection for chlorsulfuron-resistant mutants in potato:identification of point mutations in the acetohydroxyacid synthase gene. | BMC Biotechnol | 2017 Jun 6 | 28587679 |
Bongkrekic Acid-a Review of a Lesser-Known Mitochondrial Toxin. | J Med Toxicol | 2017 Jun | 28105575 |
Suppression of Lipopolysaccharide-Induced Neuroinflammation by Morin via MAPK, PI3K/Akt, and PKA/HO-1 Signaling Pathway Modulation. | J Agric Food Chem | 2017 Jan 18 | 28032996 |
Glycoconjugated Site-Selective DNA-Methylating Agent Targeting Glucose Transporters on Glioma Cells. | Biochemistry | 2017 Jan 17 | 28000448 |
Cobalt(II) Chloride Modifies the Phenotype of Macrophage Activation. | Basic Clin Pharmacol Toxicol | 2017 Aug | 28244246 |
Structures and kinetics for plant nucleoside triphosphate diphosphohydrolasessupport a domain motion catalytic mechanism. | Protein Sci | 2017 Aug | 28543850 |
<i>In vitro</i> DNA adduct profiling to mechanistically link red meat consumption to colon cancer promotion. | Toxicol Res (Camb) | 2016 Sep 1 | 30090439 |
Inducible DamID systems for genomic mapping of chromatin proteins in Drosophila. | Nucleic Acids Res | 2016 Jul 8 | 27001518 |
Soyasaponin Bb inhibits the recruitment of toll-like receptor 4 (TLR4) into lipid rafts and its signaling pathway by suppressing the nicotinamide adenine dinucleotide phosphate (NADPH) oxidase-dependent generation of reactive oxygen species. | Mol Nutr Food Res | 2016 Jul | 27005845 |
Evaluation of an immunochromatographic test for feline AB system blood typing. | J Vet Emerg Crit Care (San Antonio) | 2016 Jan-Feb | 26264678 |
Hepatoprotective effects of soluble rice protein in primary hepatocytes and in mice. | J Sci Food Agric | 2016 Jan 30 | 25715660 |
The mycotoxin patulin reacts with DNA bases with and without previous conjugation to GSH: implication for related α,β-unsaturated carbonyl compounds? | Arch Toxicol | 2016 Feb | 25537190 |
Dietary Supplementation with α-Ketoglutarate Activates mTOR Signaling and Enhances Energy Status in Skeletal Muscle of Lipopolysaccharide-Challenged Piglets. | J Nutr | 2016 Aug | 27385764 |
Efficacy and safety of tenofovir alafenamide versus tenofovir disoproxil fumarate given as fixed-dose combinations containing emtricitabine as backbones for treatment of HIV-1 infection in virologically suppressed adults: a randomised, double-blind, active-controlled phase 3 trial. | Lancet HIV | 2016 Apr | 27036991 |
Biochanin A protects dopaminergic neurons against lipopolysaccharide-induced damage and oxidative stress in a rat model of Parkinson's disease. | Pharmacol Biochem Behav | 2015 Nov | 26394281 |
Preclinical models of nicotinamide phosphoribosyltransferase inhibitor-mediated hematotoxicity and mitigation by co-treatment with nicotinic acid. | Toxicol Mech Methods | 2015 Mar | 25894564 |
Protective roles of aldo-keto reductase 1B10 and autophagy against toxicity induced by p-quinone metabolites of tert-butylhydroquinone in lung cancer A549 cells. | Chem Biol Interact | 2015 Jun 5 | 25289770 |
Tenofovir alafenamide versus tenofovir disoproxil fumarate, coformulated with elvitegravir, cobicistat, and emtricitabine, for initial treatment of HIV-1 infection: two randomised, double-blind, phase 3, non-inferiority trials. | Lancet | 2015 Jun 27 | 25890673 |
Targets
- General Function:
- Amp binding
- Specific Function:
- Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
- Gene Name:
- APRT
- Uniprot ID:
- P07741
- Molecular Weight:
- 19607.535 Da
References
- Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE: The Protein Data Bank. Nucleic Acids Res. 2000 Jan 1;28(1):235-42. [10592235 ]
- General Function:
- Non-membrane spanning protein tyrosine phosphatase activity
- Specific Function:
- Acts on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates. Isoform 3 does not possess phosphatase activity.
- Gene Name:
- ACP1
- Uniprot ID:
- P24666
- Molecular Weight:
- 18042.315 Da
References
- Overington JP, Al-Lazikani B, Hopkins AL: How many drug targets are there? Nat Rev Drug Discov. 2006 Dec;5(12):993-6. [17139284 ]
- General Function:
- S-methyl-5-thioadenosine phosphorylase activity
- Specific Function:
- Catalyzes the reversible phosphorylation of S-methyl-5'-thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S-adenosylmethionine. Has broad substrate specificity with 6-aminopurine nucleosides as preferred substrates.
- Gene Name:
- MTAP
- Uniprot ID:
- Q13126
- Molecular Weight:
- 31235.76 Da
References
- Chow WA, Bedell V, Gaytan P, Borden E, Goldblum J, Hicks D, Slovak ML: Methylthioadenosine phosphorylase gene deletions are frequently detected by fluorescence in situ hybridization in conventional chondrosarcomas. Cancer Genet Cytogenet. 2006 Apr 15;166(2):95-100. [16631464 ]
- General Function:
- Rna polymerase ii carboxy-terminal domain kinase activity
- Specific Function:
- Plays a key role in the control of the eukaryotic cell cycle by modulating the centrosome cycle as well as mitotic onset; promotes G2-M transition, and regulates G1 progress and G1-S transition via association with multiple interphase cyclins. Required in higher cells for entry into S-phase and mitosis. Phosphorylates PARVA/actopaxin, APC, AMPH, APC, BARD1, Bcl-xL/BCL2L1, BRCA2, CALD1, CASP8, CDC7, CDC20, CDC25A, CDC25C, CC2D1A, CSNK2 proteins/CKII, FZR1/CDH1, CDK7, CEBPB, CHAMP1, DMD/dystrophin, EEF1 proteins/EF-1, EZH2, KIF11/EG5, EGFR, FANCG, FOS, GFAP, GOLGA2/GM130, GRASP1, UBE2A/hHR6A, HIST1H1 proteins/histone H1, HMGA1, HIVEP3/KRC, LMNA, LMNB, LMNC, LBR, LATS1, MAP1B, MAP4, MARCKS, MCM2, MCM4, MKLP1, MYB, NEFH, NFIC, NPC/nuclear pore complex, PITPNM1/NIR2, NPM1, NCL, NUCKS1, NPM1/numatrin, ORC1, PRKAR2A, EEF1E1/p18, EIF3F/p47, p53/TP53, NONO/p54NRB, PAPOLA, PLEC/plectin, RB1, UL40/R2, RAB4A, RAP1GAP, RCC1, RPS6KB1/S6K1, KHDRBS1/SAM68, ESPL1, SKI, BIRC5/survivin, STIP1, TEX14, beta-tubulins, MAPT/TAU, NEDD1, VIM/vimentin, TK1, FOXO1, RUNX1/AML1, SIRT2 and RUNX2. CDK1/CDC2-cyclin-B controls pronuclear union in interphase fertilized eggs. Essential for early stages of embryonic development. During G2 and early mitosis, CDC25A/B/C-mediated dephosphorylation activates CDK1/cyclin complexes which phosphorylate several substrates that trigger at least centrosome separation, Golgi dynamics, nuclear envelope breakdown and chromosome condensation. Once chromosomes are condensed and aligned at the metaphase plate, CDK1 activity is switched off by WEE1- and PKMYT1-mediated phosphorylation to allow sister chromatid separation, chromosome decondensation, reformation of the nuclear envelope and cytokinesis. Inactivated by PKR/EIF2AK2- and WEE1-mediated phosphorylation upon DNA damage to stop cell cycle and genome replication at the G2 checkpoint thus facilitating DNA repair. Reactivated after successful DNA repair through WIP1-dependent signaling leading to CDC25A/B/C-mediated dephosphorylation and restoring cell cycle progression. In proliferating cells, CDK1-mediated FOXO1 phosphorylation at the G2-M phase represses FOXO1 interaction with 14-3-3 proteins and thereby promotes FOXO1 nuclear accumulation and transcription factor activity, leading to cell death of postmitotic neurons. The phosphorylation of beta-tubulins regulates microtubule dynamics during mitosis. NEDD1 phosphorylation promotes PLK1-mediated NEDD1 phosphorylation and subsequent targeting of the gamma-tubulin ring complex (gTuRC) to the centrosome, an important step for spindle formation. In addition, CC2D1A phosphorylation regulates CC2D1A spindle pole localization and association with SCC1/RAD21 and centriole cohesion during mitosis. The phosphorylation of Bcl-xL/BCL2L1 after prolongated G2 arrest upon DNA damage triggers apoptosis. In contrast, CASP8 phosphorylation during mitosis prevents its activation by proteolysis and subsequent apoptosis. This phosphorylation occurs in cancer cell lines, as well as in primary breast tissues and lymphocytes. EZH2 phosphorylation promotes H3K27me3 maintenance and epigenetic gene silencing. CALD1 phosphorylation promotes Schwann cell migration during peripheral nerve regeneration.
- Gene Name:
- CDK1
- Uniprot ID:
- P06493
- Molecular Weight:
- 34095.14 Da
References
- Havlicek L, Hanus J, Vesely J, Leclerc S, Meijer L, Shaw G, Strnad M: Cytokinin-derived cyclin-dependent kinase inhibitors: synthesis and cdc2 inhibitory activity of olomoucine and related compounds. J Med Chem. 1997 Feb 14;40(4):408-12. [9046330 ]
- General Function:
- Xanthine oxidase activity
- Specific Function:
- Key enzyme in purine degradation. Catalyzes the oxidation of hypoxanthine to xanthine. Catalyzes the oxidation of xanthine to uric acid. Contributes to the generation of reactive oxygen species. Has also low oxidase activity towards aldehydes (in vitro).
- Gene Name:
- XDH
- Uniprot ID:
- P47989
- Molecular Weight:
- 146422.99 Da
References
- Hsieh JF, Wu SH, Yang YL, Choong KF, Chen ST: The screening and characterization of 6-aminopurine-based xanthine oxidase inhibitors. Bioorg Med Chem. 2007 May 15;15(10):3450-6. Epub 2007 Mar 12. [17379526 ]
- Gene Name:
- PECR
- Uniprot ID:
- Q9BY49
- Molecular Weight:
- 32544.11 Da
- General Function:
- Protein serine/threonine kinase activity
- Specific Function:
- Serine/arginine-rich protein-specific kinase which specifically phosphorylates its substrates at serine residues located in regions rich in arginine/serine dipeptides, known as RS domains and is involved in the phosphorylation of SR splicing factors and the regulation of splicing. Promotes neuronal apoptosis by up-regulating cyclin-D1 (CCND1) expression. This is done by the phosphorylation of SRSF2, leading to the suppression of p53/TP53 phosphorylation thereby relieving the repressive effect of p53/TP53 on cyclin-D1 (CCND1) expression. Phosphorylates ACIN1, and redistributes it from the nuclear speckles to the nucleoplasm, resulting in cyclin A1 but not cyclin A2 up-regulation. Plays an essential role in spliceosomal B complex formation via the phosphorylation of DDX23/PRP28. Can mediate hepatitis B virus (HBV) core protein phosphorylation. Plays a negative role in the regulation of HBV replication through a mechanism not involving the phosphorylation of the core protein but by reducing the packaging efficiency of the pregenomic RNA (pgRNA) without affecting the formation of the viral core particles.
- Gene Name:
- SRPK2
- Uniprot ID:
- P78362
- Molecular Weight:
- 77525.955 Da
References
- Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE: The Protein Data Bank. Nucleic Acids Res. 2000 Jan 1;28(1):235-42. [10592235 ]
- General Function:
- Metal ion binding
- Specific Function:
- Catalyzes the ATP-dependent carboxylation of acetyl-CoA to malonyl-CoA. Carries out three functions: biotin carboxyl carrier protein, biotin carboxylase and carboxyltransferase. Involved in inhibition of fatty acid and glucose oxidation and enhancement of fat storage (By similarity). May play a role in regulation of mitochondrial fatty acid oxidation through malonyl-CoA-dependent inhibition of carnitine palmitoyltransferase 1 (By similarity).
- Gene Name:
- ACACB
- Uniprot ID:
- O00763
- Molecular Weight:
- 276538.575 Da
References
- Overington JP, Al-Lazikani B, Hopkins AL: How many drug targets are there? Nat Rev Drug Discov. 2006 Dec;5(12):993-6. [17139284 ]
- General Function:
- Utp binding
- Specific Function:
- Molecular chaperone that promotes the maturation, structural maintenance and proper regulation of specific target proteins involved for instance in cell cycle control and signal transduction. Undergoes a functional cycle that is linked to its ATPase activity. This cycle probably induces conformational changes in the client proteins, thereby causing their activation. Interacts dynamically with various co-chaperones that modulate its substrate recognition, ATPase cycle and chaperone function.
- Gene Name:
- HSP90AB1
- Uniprot ID:
- P08238
- Molecular Weight:
- 83263.475 Da
References
- Brough PA, Barril X, Borgognoni J, Chene P, Davies NG, Davis B, Drysdale MJ, Dymock B, Eccles SA, Garcia-Echeverria C, Fromont C, Hayes A, Hubbard RE, Jordan AM, Jensen MR, Massey A, Merrett A, Padfield A, Parsons R, Radimerski T, Raynaud FI, Robertson A, Roughley SD, Schoepfer J, Simmonite H, Sharp SY, Surgenor A, Valenti M, Walls S, Webb P, Wood M, Workman P, Wright L: Combining hit identification strategies: fragment-based and in silico approaches to orally active 2-aminothieno[2,3-d]pyrimidine inhibitors of the Hsp90 molecular chaperone. J Med Chem. 2009 Aug 13;52(15):4794-809. doi: 10.1021/jm900357y. [19610616 ]