Basic Info

Common NameCoumarin(F05572)
2D Structure
Description

Coumarin is a chemical compound/poison found in many plants, notably in high concentration in the tonka bean, woodruff, and bison grass. It has a sweet scent, readily recognised as the scent of newly-mown hay. It has clinical value as the precursor for several anticoagulants, notably warfarin. --Wikipedia. Coumarins, as a class, are comprised of numerous naturally occurring benzo-alpha-pyrone compounds with important and diverse physiological activities. The parent compound, coumarin, occurs naturally in many plants, natural spices, and foods such as tonka bean, cassia (bastard cinnamon or Chinese cinnamon), cinnamon, melilot (sweet clover), green tea, peppermint, celery, bilberry, lavender, honey (derived both from sweet clover and lavender), and carrots, as well as in beer, tobacco, wine, and other foodstuffs. Coumarin concentrations in these plants, spices, and foods range from <1 mg/kg in celery, 7000 mg/kg in cinnamon, and up to 87,000 mg/kg in cassia. An estimate of human exposure to coumarin from the diet has been calculated to be 0.02 mg/kg/day. Coumarin is used as an additive in perfumes and fragranced consumer products at concentrations ranging from <0.5% to 6.4% in fine fragrances to <0.01% in detergents. An estimate for systemic exposure of humans from the use of fragranced cosmetic products is 0.04 mg/kg BW/day, assuming complete dermal penetration. The use of coumarin as a food additive was banned by the FDA in 1954 based on reports of hepatotoxicity in rats. Due to its potential hepatotoxic effects in humans, the European Commission restricted coumarin from naturals as a direct food additive to 2 mg/kg food/day, with exceptions granting higher levels for alcoholic beverages, caramel, chewing gum, and certain 'traditional foods'. In addition to human exposure to coumarin from dietary sources and consumer products, coumarin is also used clinically as an antineoplastic and for the treatment of lymphedema and venous insufficiency. Exposure ranges from 11 mg/day for consumption of natural food ingredients to 7 g/day following clinical administration. Although adverse effects in humans following coumarin exposure are rare, and only associated with clinical doses, recent evidence indicates coumarin causes liver tumors in rats and mice and Clara cell toxicity and lung tumors in mice. The multiple effects as well as the ongoing human exposure to coumarin have resulted in a significant research effort focused on understanding the mechanism of coumarin induced toxicity/carcinogenicity and its human relevance. These investigations have revealed significant species differences in coumarin metabolism and toxicity such that the mechanism of coumarin induced effects in rodents, and the relevance of these findings for the safety assessment of coumarin exposure in humans are now better understood. In October 2004, the European Food Safety Authority (EFSA, 2004) reviewed coumarin to establish a tolerable daily intake (TDI) in foods. EFSA issued an opinion indicating that coumarin is not genotoxic, and that a threshold approach to safety assessment was most appropriate. EFSA recommended a TDI of 0 to 0.1 mg/kg BW/day. Including dietary contributions, the total human exposure is estimated to be 0.06 mg/kg/day. As a pharmaceutical, coumarin has been used in diverse applications with a wide variety of dosing regimens. Unlike coumadin and other coumarin derivatives, coumarin has no anti-coagulant activity. However, at low doses (typically 7 to 10 mg/day), coumarin has been used as a 'venotonic' to promote vein health and small venule blood flow. Additionally, coumarin has been used clinically in the treatment of high-protein lymphedema of various etiologies. (A7913).

FRCD IDF05572
CAS Number91-64-5
PubChem CID323
FormulaC9H6O2
IUPAC Name

chromen-2-one

InChI Key

ZYGHJZDHTFUPRJ-UHFFFAOYSA-N

InChI

InChI=1S/C9H6O2/c10-9-6-5-7-3-1-2-4-8(7)11-9/h1-6H

Canonical SMILES

C1=CC=C2C(=C1)C=CC(=O)O2

Isomeric SMILES

C1=CC=C2C(=C1)C=CC(=O)O2

WikipediaCoumarin
Synonyms
        
            1,2-Benzopyrone
        
            chromen-2-one
        
            coumarin
        
            2H-Chromen-2-one
        
            91-64-5
        
            2H-1-Benzopyran-2-one
        
            cumarin
        
            Rattex
        
            Tonka bean camphor
        
            Coumarinic anhydride
        
Classifies
                

                  
                    Plant Toxin
                  

                
        
Update DateNov 13, 2018 17:07

Chemical Taxonomy

KingdomOrganic compounds
SuperclassPhenylpropanoids and polyketides
ClassCoumarins and derivatives
SubclassNot available
Intermediate Tree NodesNot available
Direct ParentCoumarins and derivatives
Alternative Parents
Molecular FrameworkAromatic heteropolycyclic compounds
SubstituentsCoumarin - 1-benzopyran - Benzopyran - Pyranone - Benzenoid - Pyran - Heteroaromatic compound - Lactone - Oxacycle - Organoheterocyclic compound - Organic oxygen compound - Organic oxide - Hydrocarbon derivative - Organooxygen compound - Aromatic heteropolycyclic compound
DescriptionThis compound belongs to the class of organic compounds known as coumarins and derivatives. These are polycyclic aromatic compounds containing a 1-benzopyran moiety with a ketone group at the C2 carbon atom (1-benzopyran-2-one).

Properties

Property NameProperty Value
Molecular Weight146.145
Hydrogen Bond Donor Count0
Hydrogen Bond Acceptor Count2
Rotatable Bond Count0
Complexity196
Monoisotopic Mass146.037
Exact Mass146.037
XLogP1.4
Formal Charge0
Heavy Atom Count11
Defined Atom Stereocenter Count0
Undefined Atom Stereocenter Count0
Defined Bond Stereocenter Count0
Undefined Bond Stereocenter Count0
Isotope Atom Count0
Covalently-Bonded Unit Count1

ADMET

Model Result Probability
Absorption
Blood-Brain BarrierBBB+0.9565
Human Intestinal AbsorptionHIA+0.9912
Caco-2 PermeabilityCaco2+0.9155
P-glycoprotein SubstrateNon-substrate0.6697
P-glycoprotein InhibitorNon-inhibitor0.8540
Non-inhibitor0.8663
Renal Organic Cation TransporterNon-inhibitor0.8301
Distribution
Subcellular localizationMitochondria0.4995
Metabolism
CYP450 2C9 SubstrateNon-substrate0.7966
CYP450 2D6 SubstrateNon-substrate0.9117
CYP450 3A4 SubstrateNon-substrate0.7139
CYP450 1A2 InhibitorInhibitor0.9117
CYP450 2C9 InhibitorNon-inhibitor0.6943
CYP450 2D6 InhibitorNon-inhibitor0.9105
CYP450 2C19 InhibitorNon-inhibitor0.5000
CYP450 3A4 InhibitorNon-inhibitor0.8310
CYP Inhibitory PromiscuityLow CYP Inhibitory Promiscuity0.8115
Excretion
Toxicity
Human Ether-a-go-go-Related Gene InhibitionWeak inhibitor0.8702
Non-inhibitor0.9474
AMES ToxicityNon AMES toxic0.8870
CarcinogensNon-carcinogens0.9412
Fish ToxicityHigh FHMT0.6109
Tetrahymena Pyriformis ToxicityHigh TPT0.9544
Honey Bee ToxicityHigh HBT0.8062
BiodegradationReady biodegradable0.5884
Acute Oral ToxicityII0.7019
Carcinogenicity (Three-class)Warning0.5324

Model Value Unit
Absorption
Aqueous solubility-2.7525LogS
Caco-2 Permeability1.7653LogPapp, cm/s
Distribution
Metabolism
Excretion
Toxicity
Rat Acute Toxicity2.4622LD50, mol/kg
Fish Toxicity1.2095pLC50, mg/L
Tetrahymena Pyriformis Toxicity0.6735pIGC50, ug/L

References

TitleJournalDatePubmed ID
Hepatoprotection of auraptene from peels of citrus fruits against thioacetamide-induced hepatic fibrosis in mice by activating farnesoid X receptor.Food Funct2018 May 2329721568
Pharmacological and Nutritional Effects of Natural Coumarins and Their Structure-Activity Relationships.Mol Nutr Food Res2018 May 1129750855
Coumarin: a novel player in microbial quorum sensing and biofilm formationinhibition.Appl Microbiol Biotechnol2018 Mar29392389
Detoxification of aflatoxins on prospective approach: effect on structural, mechanical, and optical properties under pressures.Interdiscip Sci2018 Jun29282626
Biological Degradation of Aflatoxin B₁ by Cell-Free Extracts of Bacillus velezensis DY3108 with Broad PH Stability and Excellent Thermostability.Toxins (Basel)2018 Aug 1430110983
Evaluation of Aculeatin and Toddaculin Isolated from Toddalia asiatica as Anti-inflammatory Agents in LPS-Stimulated RAW264 Macrophages.Biol Pharm Bull201829311475
Vertical Leaching of Allelochemicals Affecting Their Bioactivity and theMicrobial Community of Soil.J Agric Food Chem2017 Sep 1328800227
The paralytic shellfish toxin, saxitoxin, enters the cytoplasm and induces apoptosis of oyster immune cells through a caspase-dependent pathway.Aquat Toxicol2017 Sep28711010
New Prenylated ortho-Dihydroxycoumarins from the Fruits of Ficus nipponica.Chem Biodivers2017 Sep28574644
Identification of Two Cytochrome Monooxygenase P450 Genes, CYP321A7 and CYP321A9, from the Tobacco Cutworm Moth (Spodoptera Litura) and Their Expression in Response to Plant Allelochemicals.Int J Mol Sci2017 Oct 3029084173
Toxicity of coumarins synthesized by Pechmann-Duisberg condensation againstDrosophila melanogaster larvae and antibacterial effects.Food Chem Toxicol2017 Nov28576470
Antifungal and antiaflatoxigenic activities of coumarinyl thiosemicarbazides against Aspergillus flavus NRRL 3251.Arh Hig Rada Toksikol2017 Mar 128365677
Pathological and biochemical evaluation of coumarin and chlorophyllin against aflatoxicosis in rat.Exp Toxicol Pathol2017 Jun 1428190563
The Activity of the Antioxidant Defense System of the Weed Species Senna obtusifolia L. and its Resistance to Allelochemical Stress.J Chem Ecol2017 Jul28711978
Hydrogen peroxide-dependent antibacterial action of Melilotus albus honey.Lett Appl Microbiol2017 Jul28426165
Toxicity of Plant Secondary Metabolites Modulating Detoxification Genes Expression for Natural Red Palm Weevil Pesticide Development.Molecules2017 Jan 2028117698
Umbelliferone reverses depression-like behavior in chronic unpredictable mildstress-induced rats by attenuating neuronal apoptosis via regulating ROCK/Aktpathway.Behav Brain Res2017 Jan 1527646771
4-Hydroxy-7-methyl-3-phenylcoumarin Suppresses Aflatoxin Biosynthesis via Downregulation of aflK Expressing Versicolorin B Synthase in Aspergillus flavus.Molecules2017 Apr 2928468270
Inhibition of Hafnia alvei H4 Biofilm Formation by the Food AdditiveDihydrocoumarin.J Food Prot2017 Apr 12:842-84728402186
New routes for plant iron mining.New Phytol2017 Apr27918629

Targets

General Function:
Steroid hydroxylase activity
Specific Function:
Exhibits a high coumarin 7-hydroxylase activity. Can act in the hydroxylation of the anti-cancer drugs cyclophosphamide and ifosphamide. Competent in the metabolic activation of aflatoxin B1. Constitutes the major nicotine C-oxidase. Acts as a 1,4-cineole 2-exo-monooxygenase. Possesses low phenacetin O-deethylation activity.
Gene Name:
CYP2A6
Uniprot ID:
P11509
Molecular Weight:
56501.005 Da
General Function:
Zinc ion binding
Specific Function:
Nuclear hormone receptor. The steroid hormones and their receptors are involved in the regulation of eukaryotic gene expression and affect cellular proliferation and differentiation in target tissues. Ligand-dependent nuclear transactivation involves either direct homodimer binding to a palindromic estrogen response element (ERE) sequence or association with other DNA-binding transcription factors, such as AP-1/c-Jun, c-Fos, ATF-2, Sp1 and Sp3, to mediate ERE-independent signaling. Ligand binding induces a conformational change allowing subsequent or combinatorial association with multiprotein coactivator complexes through LXXLL motifs of their respective components. Mutual transrepression occurs between the estrogen receptor (ER) and NF-kappa-B in a cell-type specific manner. Decreases NF-kappa-B DNA-binding activity and inhibits NF-kappa-B-mediated transcription from the IL6 promoter and displace RELA/p65 and associated coregulators from the promoter. Recruited to the NF-kappa-B response element of the CCL2 and IL8 promoters and can displace CREBBP. Present with NF-kappa-B components RELA/p65 and NFKB1/p50 on ERE sequences. Can also act synergistically with NF-kappa-B to activate transcription involving respective recruitment adjacent response elements; the function involves CREBBP. Can activate the transcriptional activity of TFF1. Also mediates membrane-initiated estrogen signaling involving various kinase cascades. Isoform 3 is involved in activation of NOS3 and endothelial nitric oxide production. Isoforms lacking one or several functional domains are thought to modulate transcriptional activity by competitive ligand or DNA binding and/or heterodimerization with the full length receptor. Essential for MTA1-mediated transcriptional regulation of BRCA1 and BCAS3. Isoform 3 can bind to ERE and inhibit isoform 1.
Gene Name:
ESR1
Uniprot ID:
P03372
Molecular Weight:
66215.45 Da
References
  1. Sipes NS, Martin MT, Kothiya P, Reif DM, Judson RS, Richard AM, Houck KA, Dix DJ, Kavlock RJ, Knudsen TB: Profiling 976 ToxCast chemicals across 331 enzymatic and receptor signaling assays. Chem Res Toxicol. 2013 Jun 17;26(6):878-95. doi: 10.1021/tx400021f. Epub 2013 May 16. [23611293 ]