Scaffolding dockerin binding protein A

Name	Scaffolding dockerin binding protein A
Synonyms
Gene Name	sdbA
Organism	Clostridium thermocellum
Amino acid sequence	>lcl\|BSEQ0011923\|Scaffolding dockerin binding protein A MRKKKRLISLLLAVFIAVACLPAGIARADKASSIELKFDRNKGEVGDILIGTVRINNIKN FAGFQVNIVYDPKVLMAVDPETGKEFTSSTFPPGRTVLKNNAYGPIQIADNDPEKGILNF ALAYSYIAGYKETGVAEESGIIAKIGFKILQKKSTAVKFQDTLSMPGAISGTQLFDWDGE VITGYEVIQPDVLSLGDEPYETPGTDIPISDNPAATPSSTPSVTPSPEVKPTQTPSPAEN SAKVELEPVLDNATGEAKAAIDEEKLNKALDEAKKSEDDKLVELNIKKVENADAYIQQLP AKFLIKSDAEYKLRIATEQGIIEVPANMLNTADISKLVKNDSVVEFVIRKVKVDELGAEL KEKIGNRPVIDISVVVDGKKVEWSNYKAKVKISIPYKPDAKELENHEHIVVLHIDDAGKA VSVPSGKYEPSLGVVTFETNHLSKYAVSYVYKTFADIGSYAWAKKQIEVLASKGVINGTS DTTFTPQADITRADFMILLVKALGLTAEVTSNFDDVSEKDYYYEYVGIAKELGITTGVGN NKFNPKAKITRQDMMVLTTNALRIAGKISSTGTRADVERFSDKDQIASYAVEGVATLVKE GIVVGSGDIINPRGNASRAELAAIIYKIYYK
Number of residues	None
Molecular Weight	68618.73
Theoretical pI	5.21
GO Classification	Functions carbohydrate binding Processes polysaccharide catabolic process Components
General Function	Carbohydrate binding
Specific Function	None
Transmembrane Regions
GenBank Protein ID
UniProtKB ID	P71143
UniProtKB Entry Name
Cellular Location	None
Gene sequence	>lcl\|BSEQ0005346\|1896 bp ATGAGGAAGAAAAAAAGATTAATATCATTACTGCTTGCGGTTTTTATCGCCGTTGCATGT CTGCCGGCGGGAATTGCAAGGGCAGATAAAGCCTCGAGCATTGAGCTTAAGTTTGACCGC AATAAGGGAGAAGTTGGAGATATACTTATTGGTACCGTAAGGATAAACAATATCAAGAAT TTCGCAGGATTTCAGGTAAACATTGTATATGATCCAAAAGTCTTAATGGCTGTTGACCCT GAAACGGGGAAAGAATTTACTTCTTCAACATTTCCGCCAGGACGCACTGTACTGAAAAAC AATGCTTACGGCCCAATACAGATTGCGGACAATGATCCGGAAAAAGGGATACTGAACTTC GCGCTTGCATATTCATATATTGCGGGATACAAAGAAACAGGAGTAGCGGAGGAAAGCGGC ATAATTGCGAAAATTGGATTTAAAATACTCCAGAAAAAGAGCACTGCCGTAAAATTCCAG GATACATTAAGCATGCCCGGAGCTATTTCGGGAACACAGCTGTTTGACTGGGACGGAGAA GTTATTACCGGATATGAGGTAATACAGCCGGATGTGCTGAGTTTGGGTGACGAGCCTTAT GAGACACCGGGAACGGATATTCCGATATCCGACAATCCGGCAGCAACTCCGTCATCCACG CCGTCAGTTACTCCTTCACCGGAAGTTAAACCGACTCAGACGCCTTCGCCTGCAGAAAAT TCTGCAAAAGTGGAGCTTGAACCTGTGTTGGATAATGCAACAGGAGAAGCAAAGGCGGCA ATAGATGAAGAAAAATTAAACAAGGCTCTTGATGAAGCGAAAAAATCGGAAGATGACAAA CTTGTGGAACTTAACATAAAGAAGGTTGAAAATGCCGATGCTTACATACAACAGCTTCCG GCGAAATTCCTGATAAAAAGTGACGCCGAATATAAGCTGAGAATAGCTACAGAGCAGGGA ATTATAGAAGTACCGGCCAACATGCTGAATACTGCGGATATTTCAAAGCTTGTAAAAAAT GACTCCGTTGTTGAATTCGTCATAAGAAAAGTAAAAGTCGATGAACTTGGTGCAGAGCTC AAAGAGAAGATAGGCAACAGGCCGGTGATTGACATAAGCGTGGTTGTTGACGGCAAAAAA GTTGAATGGAGCAATTACAAAGCCAAGGTTAAAATATCAATTCCTTACAAGCCTGATGCA AAAGAGCTGGAGAACCACGAGCATATTGTTGTACTCCATATTGATGACGCCGGCAAGGCA GTTTCCGTACCCAGCGGAAAATATGAACCTTCTTTGGGCGTCGTTACGTTTGAGACGAAT CATTTAAGCAAGTATGCGGTTTCATATGTTTACAAGACTTTCGCGGATATTGGTTCATAT GCCTGGGCTAAAAAGCAGATAGAGGTTTTGGCTTCCAAAGGAGTAATTAACGGTACATCC GATACCACTTTTACGCCCCAGGCAGACATAACAAGGGCGGATTTCATGATACTTCTTGTA AAGGCACTGGGATTGACTGCCGAGGTTACTTCCAATTTTGATGATGTGTCCGAAAAAGAC TACTATTATGAATACGTGGGAATTGCAAAAGAGCTTGGAATTACGACAGGAGTCGGAAAC AACAAGTTCAATCCGAAAGCCAAAATTACAAGACAGGATATGATGGTACTTACAACAAAT GCTCTCAGGATTGCAGGAAAAATATCGAGCACAGGAACCCGCGCTGATGTTGAAAGATTT TCGGACAAGGACCAGATAGCTTCATATGCGGTTGAAGGCGTTGCAACCTTGGTAAAAGAA GGTATTGTAGTGGGAAGCGGCGATATTATAAATCCAAGGGGAAATGCTTCAAGAGCCGAA CTTGCAGCAATCATATACAAGATTTACTACAAGTAA
GenBank Gene ID
GeneCard ID	None
GenAtlas ID
HGNC ID
Chromosome Location	None
Locus	None
References	Leibovitz E, Beguin P: A new type of cohesin domain that specifically binds the dockerin domain of the Clostridium thermocellum cellulosome-integrating protein CipA. J Bacteriol. 1996 Jun;178(11):3077-84. [8655483 ] Carvalho AL, Pires VM, Gloster TM, Turkenburg JP, Prates JA, Ferreira LM, Romao MJ, Davies GJ, Fontes CM, Gilbert HJ: Insights into the structural determinants of cohesin-dockerin specificity revealed by the crystal structure of the type II cohesin from Clostridium thermocellum SdbA. J Mol Biol. 2005 Jun 24;349(5):909-15. [15913653 ] Currie MA, Adams JJ, Faucher F, Bayer EA, Jia Z, Smith SP: Scaffoldin conformation and dynamics revealed by a ternary complex from the Clostridium thermocellum cellulosome. J Biol Chem. 2012 Aug 3;287(32):26953-61. doi: 10.1074/jbc.M112.343897. Epub 2012 Jun 15. [22707718 ]

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