Enzyme

Download
EC Tree
     1. Oxidoreductases
        1.4 Acting on the CH-NH2 group of donors
            1.4.3 With oxygen as acceptor
ID:1.4.3.5
Description:Pyridoxal 5'-phosphate synthase.
Alternative Name: Pyridoxine (pyridoxamine)phosphate oxidase.
Pyridoxine (pyridoxamine) 5'-phosphate oxidase.
Pyridoxamine-phosphate oxidase.
Pyridoxamine phosphate oxidase.
Pyridoxamine 5'-phosphate oxidase.
PMP oxidase.
Prosite: PDOC00815;
PDB:
PDBScop
6H00 8031535; 8043913;
1NRG 8031535; 8043913;
4HMV 8030348; 8042727; 8030348; 8042727;
4HMU 8030348; 8042727; 8030348; 8042727;
4HMT 8030348; 8042727; 8030348; 8042727;
 » show all

Cath: 3.20.20.70; 3.30.360.10; 3.40.50.720; 3.40.50.880; 3.40.640.10; 3.90.1150.10; 2.30.110.10;

3D structure

Click one PDB to see exact 3D structure provided by NGL.

Note: Use your mouse to drag, rotate, and zoom in and out of the structure. Mouse-over to identify atoms and bonds. Mouse controls documentation.

References

External Links

UniProtKB Enzyme Link: UniProtKB 1.4.3.5
BRENDA Enzyme Link: BRENDA 1.4.3.5
KEGG Enzyme Link: KEGG1.4.3.5
BioCyc Enzyme Link: BioCyc 1.4.3.5
ExPASy Enzyme Link: ExPASy1.4.3.5
EC2PDB Enzyme Link: EC2PDB 1.4.3.5
ExplorEnz Enzyme Link: ExplorEnz 1.4.3.5
PRIAM enzyme-specific profiles Link: PRIAM 1.4.3.5
IntEnz Enzyme Link: IntEnz 1.4.3.5
MEDLINE Enzyme Link: MEDLINE 1.4.3.5
MSA:

1.4.3.5;

Phylogenetic Tree:

1.4.3.5;

Uniprot:
M-CSA:
RHEA:15817 H2O + O2 + pyridoxamine 5'-phosphate = H2O2 + NH4(+) + pyridoxal 5'-phosphate
RULE(radius=1) [*:1]-[CH2;+0:2]-[NH2;+0:3].[O;H0;+0:4]=[O;H0;+0:5].[OH2;+0:6]>>[*:1]-[CH;+0:2]=[O;H0;+0:6].[NH3;+0:3].[OH;+0:4]-[OH;+0:5]
Reaction
Core-to-Core No scaffolds atoms were exchanged as a result of the reaction

References

TitleAuthorsDatePubMed ID
Expression, purification, and characterization of recombinant Escherichia coli pyridoxine 5'-phosphate oxidase.Di Salvo M, Yang E, Zhao G, Winkler ME, Schirch V1998 Aug9693059
Kinetic limitation and cellular amount of pyridoxine (pyridoxamine) 5'-phosphate oxidase of Escherichia coli K-12.Zhao G, Winkler ME1995 Feb7860596
Vitamer levels, stress response, enzyme activity, and gene regulation of Arabidopsis lines mutant in the pyridoxine/pyridoxamine 5'-phosphate oxidase (PDX3) and the pyridoxal kinase (SOS4) genes involved in the vitamin B6 salvage pathway.González E, Danehower D, Daub ME2007 Nov17873088
Identification of a pyridoxine (pyridoxamine) 5'-phosphate oxidase from Arabidopsis thaliana.Sang Y, Barbosa JM, Wu H, Locy RD, Singh NK2007 Feb 617224143
Active site structure and stereospecificity of Escherichia coli pyridoxine-5'-phosphate oxidase.di Salvo ML, Ko TP, Musayev FN, Raboni S, Schirch V, Safo MK2002 Jan 1811786019

RHEA:15149 O2 + pyridoxine 5'-phosphate = H2O2 + pyridoxal 5'-phosphate
RULE(radius=1) [*:1]-[CH2;+0:2]-[OH;+0:3].[O;H0;+0:4]=[O;H0;+0:5]>>[*:1]-[CH;+0:2]=[O;H0;+0:3].[OH;+0:4]-[OH;+0:5]
Reaction
Core-to-Core No scaffolds atoms were exchanged as a result of the reaction

References

TitleAuthorsDatePubMed ID
Expression, purification, and characterization of recombinant Escherichia coli pyridoxine 5'-phosphate oxidase.Di Salvo M, Yang E, Zhao G, Winkler ME, Schirch V1998 Aug9693059
Kinetic limitation and cellular amount of pyridoxine (pyridoxamine) 5'-phosphate oxidase of Escherichia coli K-12.Zhao G, Winkler ME1995 Feb7860596
Rv2607 from Mycobacterium tuberculosis is a pyridoxine 5'-phosphate oxidase with unusual substrate specificity.Mashalidis EH, Mukherjee T, Sledź P, Matak-Vinković D, Boshoff H, Abell C, Barry CE 3rd201122110704
Vitamer levels, stress response, enzyme activity, and gene regulation of Arabidopsis lines mutant in the pyridoxine/pyridoxamine 5'-phosphate oxidase (PDX3) and the pyridoxal kinase (SOS4) genes involved in the vitamin B6 salvage pathway.González E, Danehower D, Daub ME2007 Nov17873088
Identification of a pyridoxine (pyridoxamine) 5'-phosphate oxidase from Arabidopsis thaliana.Sang Y, Barbosa JM, Wu H, Locy RD, Singh NK2007 Feb 617224143
Active site structure and stereospecificity of Escherichia coli pyridoxine-5'-phosphate oxidase.di Salvo ML, Ko TP, Musayev FN, Raboni S, Schirch V, Safo MK2002 Jan 1811786019