| EC Tree |
| 3. Hydrolases |
| 3.1 Acting on ester bonds |
| 3.1.3 Phosphoric-monoester hydrolases |
| ID: | 3.1.3.89 |
|---|---|
| Description: | 5'-deoxynucleotidase. |
| Cath: | 1.10.3210.10; |
Click one PDB to see exact 3D structure provided by NGL.
Note: Use your mouse to drag, rotate, and zoom in and out of the structure. Mouse-over to identify atoms and bonds. Mouse controls documentation.| UniProtKB Enzyme Link: | UniProtKB 3.1.3.89 |
| BRENDA Enzyme Link: | BRENDA 3.1.3.89 |
| KEGG Enzyme Link: | KEGG3.1.3.89 |
| BioCyc Enzyme Link: | BioCyc 3.1.3.89 |
| ExPASy Enzyme Link: | ExPASy3.1.3.89 |
| EC2PDB Enzyme Link: | EC2PDB 3.1.3.89 |
| ExplorEnz Enzyme Link: | ExplorEnz 3.1.3.89 |
| PRIAM enzyme-specific profiles Link: | PRIAM 3.1.3.89 |
| IntEnz Enzyme Link: | IntEnz 3.1.3.89 |
| MEDLINE Enzyme Link: | MEDLINE 3.1.3.89 |
| RHEA:36167 | a 2'-deoxyribonucleoside 5'-phosphate + H2O = a 2'-deoxyribonucleoside + phosphate |
| RULE(radius=1) | [*:1]-[P;H0;+0:2](=[*:3])(-[*:4])-[O;H0;+0:5]-[*:6].[OH2;+0:7]>>[*:6]-[OH;+0:5].[*:1]-[P;H0;+0:2](=[*:3])(-[*:4])-[OH;+0:7] |
| Reaction | ![]() |
| Core-to-Core | No scaffolds atoms were exchanged as a result of the reaction |
| Title | Authors | Date | PubMed ID |
|---|---|---|---|
| General enzymatic screens identify three new nucleotidases in Escherichia coli. Biochemical characterization of SurE, YfbR, and YjjG. | Proudfoot M, Kuznetsova E, Brown G, Rao NN, Kitagawa M, Mori H, Savchenko A, Yakunin AF | 2004 Dec 24 | 15489502 |
| Structural insight into the mechanism of substrate specificity and catalytic activity of an HD-domain phosphohydrolase: the 5'-deoxyribonucleotidase YfbR from Escherichia coli. | Zimmerman MD, Proudfoot M, Yakunin A, Minor W | 2008 Apr 18 | 18353368 |