Enzyme

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     3. Hydrolases
        3.1 Acting on ester bonds
            3.1.4 Phosphoric-diester hydrolases
ID:3.1.4.17
Description:3',5'-cyclic-nucleotide phosphodiesterase.
Alternative Name: Cyclic AMP phosphodiesterase.
Prosite: PDOC00530; PDOC00116;
PDB:
PDBScop
3JWQ 8029757; 8042136; 8029757; 8042136; 8029757; 8042136; 8029757; 8042136;
2H42 8029757; 8042136; 8029757; 8042136; 8029757; 8042136;
3SIE 8029757; 8042136; 8029757; 8042136;
3JWR 8029757; 8042136; 8029757; 8042136;
3B2R 8029757; 8042136; 8029757; 8042136;
 » show all

Cath: 1.10.1300.10; 3.30.450.40; 3.30.750.180; 3.60.21.10; 3.60.21.40;

3D structure

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PDB
3JWQ; 2H42; 3SIE; 3JWR; 3B2R; 1UDU; 6ACB; 5ZZ2; 5JO3; 4OEX; 4OEW; 4MD6; 4IA0; 4I9Z; 4G2Y; 4G2W; 3TGG; 3TGE; 3SHZ; 3SHY; 3HDZ; 3HC8; 3BJC; 2H44; 2H40; 2CHM; 1XP0; 1XOZ; 1UHO; 1UDT; 1TBF; 1T9R; 1RKP; 1SOJ; 1SO2; 6A3N; 4Y8C; 4Y87; 4Y86; 4GH6; 4G2L; 4G2J; 4E90; 3QI4; 3QI3; 3N3Z; 3K3H; 3K3E; 3JSW; 3JSI; 3DYS; 3DYQ; 3DYN; 3DY8; 2YY2; 2HD1; 5B25; 5W6E; 5UP0; 5UOY; 4NPW; 4NPV; 1TAZ; 3LY2; 5OHJ; 4X0F; 4WZI; 3WD9; 3W5E; 3KKT; 3HMV; 3G45; 1Y2J; 1Y2H; 1XOT; 1XN0; 1XMY; 1XMU; 1XM6; 1XM4; 1XLZ; 1XLX; 1TB5; 1ROR; 1RO9; 1RO6; 1F0J; 5LAQ; 5K6J; 4NW7; 4MYQ; 4KP6; 3O57; 3O56; 3O0J; 3GWT; 3FRG; 3D3P; 2QYL; 1XOS; 1MKD; 5K1I; 6NJJ; 6NJH; 6FW3; 6FTW; 6FTA; 6FT0; 6FET; 6FE7; 6FDI; 6BOJ; 5TKB; 5LBO; 4WCU; 4W1O; 4OGB; 3V9B; 3SL8; 3SL6; 3SL4; 3SL3; 3IAD; 3G58; 3G4L; 3G4K; 3G4I; 3G4G; 2FM5; 2FM0; 1ZKN; 1Q9M; 1PTW; 1OYN; 6NJI; 6FEB; 6FDC; 6F8X; 6F8W; 6F8V; 6F8U; 6F8T; 6F8R; 6F6U; 5WQA; 5WH6; 5WH5; 5K32; 2QYN; 2PW3; 1Y2K; 1Y2E; 1Y2D; 1Y2C; 1Y2B; 1XOR; 1XOQ; 1XON; 1TBB; 1TB7; 3K4S; 3IAK; 6MZB; 6MSC; 6MSA; 6IJI; 6IJH; 6CYD; 6CYC; 6CYB; 6C7J; 6C7I; 6C7G; 6C7F; 6C7E; 6C7D; 6BLF; 6B98; 6B97; 6B96; 5ZNL; 5XUJ; 5XUI; 5XKM; 5VP1; 5VP0; 5UWF; 5U7L; 5U7K; 5U7J; 5U7I; 5U7D; 5U00; 5TZZ; 5TZX; 5TZW; 5TZH; 5TZC; 5TZA; 5TZ3; 5K9R; 5I2R; 5EDI; 5EDH; 5EDG; 5EDE; 5DH5; 5DH4; 5C2H; 5C2E; 5C2A; 5C29; 5C28; 5C1W; 5B4L; 5B4K; 5AXQ; 5AXP; 4ZO5; 4YS7; 4YQH; 4Y2B; 4XY2; 4WN1; 4TPP; 4TPM; 4QGE; 4PM0; 4PHW; 4P1R; 4P0N; 4OJX; 4OJV; 4MVH; 4MUW; 4MSN; 4MSH; 4MSE; 4MSC; 4MSA; 4MS0; 4MRZ; 4MRW; 4LM4; 4LM3; 4LM2; 4LM1; 4LM0; 4LLX; 4LLP; 4LLK; 4LLJ; 4LKQ; 4JIB; 4HTZ; 4HTX; 4HF4; 4HEU; 4FCD; 4FCB; 4DFF; 4DDL; 4D09; 4D08; 4C1I; 4BBX; 4AJM; 4AJG; 4AJF; 4AJD; 4AEL; 3WYM; 3WYL; 3WYK; 3WS9; 3WS8; 3WI2; 3UUO; 3UI7; 3TVX; 3SNL; 3SNI; 3SN7; 3SL5; 3QPP; 3QPO; 3QPN; 3LXG; 3JBQ; 3JAB; 3ITU; 3ITM; 3IBJ; 3I8V; 3HR1; 3HQZ; 3HQY; 3HQW; 3G3N; 3ECN; 3ECM; 3DYL; 2Y0J; 2WEY; 2QYM; 2QYK; 2OVY; 2OVV; 2OUY; 2OUV; 2OUU; 2OUS; 2OUR; 2OUQ; 2OUP; 2OUN; 2O8H; 1ZKL; 1Z1L; 1XOM; 1T9S;

References

External Links

UniProtKB Enzyme Link: UniProtKB 3.1.4.17
BRENDA Enzyme Link: BRENDA 3.1.4.17
KEGG Enzyme Link: KEGG3.1.4.17
BioCyc Enzyme Link: BioCyc 3.1.4.17
ExPASy Enzyme Link: ExPASy3.1.4.17
EC2PDB Enzyme Link: EC2PDB 3.1.4.17
ExplorEnz Enzyme Link: ExplorEnz 3.1.4.17
PRIAM enzyme-specific profiles Link: PRIAM 3.1.4.17
IntEnz Enzyme Link: IntEnz 3.1.4.17
MEDLINE Enzyme Link: MEDLINE 3.1.4.17
MSA:

3.1.4.17;

Phylogenetic Tree:

3.1.4.17;

Uniprot:
M-CSA:
RHEA:14653 a nucleoside 3',5'-cyclic phosphate + H2O = a nucleoside 5'-phosphate + H(+)
RULE(radius=1) [*:1]-[O;H0;+0:2]-[P;H0;+0:3](-[*:4])(=[*:5])-[*:6].[OH2;+0:7]>>([*:1]-[OH;+0:2].[*:4]-[P;H0;+0:3](=[*:5])(-[*:6])-[OH;+0:7])
Reaction
Core-to-Core No scaffolds atoms were exchanged as a result of the reaction

References

TitleAuthorsDatePubMed ID
Cyclic nucleotide phosphodiesterase of Chlamydomonas reinhardtii.Fischer U, Amrhein N1974 Apr 254365506
X-ray crystal structure of phosphodiesterase 2 in complex with a highly selective, nanomolar inhibitor reveals a binding-induced pocket important for selectivity.Zhu J, Yang Q, Dai D, Huang Q2013 Aug 1423899287
Mechanism for the allosteric regulation of phosphodiesterase 2A deduced from the X-ray structure of a near full-length construct.Pandit J, Forman MD, Fennell KF, Dillman KS, Menniti FS2009 Oct 2719828435
A mycobacterial cyclic AMP phosphodiesterase that moonlights as a modifier of cell wall permeability.Podobnik M, Tyagi R, Matange N, Dermol U, Gupta AK, Mattoo R, Seshadri K, Visweswariah SS2009 Nov 2019801656
The Rv0805 gene from Mycobacterium tuberculosis encodes a 3',5'-cyclic nucleotide phosphodiesterase: biochemical and mutational analysis.Shenoy AR, Sreenath N, Podobnik M, Kovacevic M, Visweswariah SS2005 Dec 616313172
Crystal structure of human phosphodiesterase 3B: atomic basis for substrate and inhibitor specificity.Scapin G, Patel SB, Chung C, Varnerin JP, Edmondson SD, Mastracchio A, Parmee ER, Singh SB, Becker JW, Van der Ploeg LH, Tota MR2004 May 2515147193